RchiOBHm_Chr5g0056221

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
59753256 .. 59754023
768 bp
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UTR
Exon/CDS
Intron
PRQ33313

Sequence Viewer

Length: 177 bp
ATGGTTCAGGAAACACGATCGTTAAGGAAGCTTAAGCGGAAAGCGTCAGAGTGTGGAGTACGCCAGCATTTTCCAGGTAGGGTGAGCTGTCCCTTCCTTATTAGAGGCTTTTCGATATATGTGGAATGCTCTAGTATAATATTATGTTGCCTGCAAGTATTTTTGGTTGTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.67

Weight (kDa)

9.56

Isoelectric Point (pI)

75.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 37
AfaI GTAC 1 cut(s) 60
AflII CTTAAG 1 cut(s) 32
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 2 cut(s) 31, 87
AluI AGCT 2 cut(s) 31, 87
AsuHPI GGTGA 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 75
BfaI CTAG 1 cut(s) 132
BfrI CTTAAG 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 1 cut(s) 37
BspTI CTTAAG 1 cut(s) 32
BssMI GATC 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 65, 152
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstMCI CGRYCG 1 cut(s) 20
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 65, 152
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 59
CviJI RGCY 3 cut(s) 31, 87, 108
CviKI_1 RGCY 3 cut(s) 31, 87, 108
CviQI GTAC 1 cut(s) 59
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 73
FaiI YATR 4 cut(s) 118, 120, 137, 145
FaqI GGGAC 1 cut(s) 75
FspBI CTAG 1 cut(s) 132
HgaI GACGC 1 cut(s) 33
HindIII AAGCTT 1 cut(s) 29
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 8
HpyAV CCTTC 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 154
Kzo9I GATC 1 cut(s) 17
LpnPI CCDG 4 cut(s) 60, 77, 87, 164
MaeI CTAG 1 cut(s) 132
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MnlI CCTC 1 cut(s) 98
MseI TTAA 2 cut(s) 23, 33
MspCI CTTAAG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 131
MvaI CCWGG 1 cut(s) 75
NdeII GATC 1 cut(s) 17
PctI GAATGC 1 cut(s) 131
Ple19I CGATCG 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PvuI CGATCG 1 cut(s) 20
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 23, 33
Sau3AI GATC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 75
SetI ASST 3 cut(s) 33, 79, 89
SgeI CNNG 8 cut(s) 20, 27, 76, 86, 87, 144, 163, 167
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SsiI CCGC 1 cut(s) 37
SspI AATATT 1 cut(s) 141
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 73
TaqI TCGA 1 cut(s) 113
Tru1I TTAA 2 cut(s) 23, 33
Tru9I TTAA 2 cut(s) 23, 33
TspDTI ATGAA 1 cut(s) 161
Vha464I CTTAAG 1 cut(s) 32
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.