RchiOBHm_Chr6g0251521

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004253
Physical Location & Seq
Reverse (-)
6802455 .. 6804901
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22548

Sequence Viewer

Length: 378 bp
ATGAAATTGGAAGGAGTATTGAAAGTCGGAAACGAAACTAAGTTTGTGCGAGCACTCCAATTCCAGTGTGCAGGTTTTGAGCATGTGGTCGGGAAGCGTATAGGAGAGGCACATGGCCCGGCTTGGCGTATTCCTCTTTGTCTTTACAAAAGTACAGTTTTGGGTCCATTATCGGATTTCGAAGTAACTTATTTATTTACTTTCTTACTAATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTCCTACTCGCTTACACAAATTCCGGGAGACCTGTAACCCTGGGGCGCGTCTCCCATGCTTGTAGTTATTTAGTGAATTGTTTTATTCTCCAAATTGGGCTCCGATTGCAAGCCCAAAACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.26

Weight (kDa)

9.16

Isoelectric Point (pI)

21.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AccII CGCG 1 cut(s) 300
AcsI RAATTY 1 cut(s) 271
AfaI GTAC 1 cut(s) 154
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 1 cut(s) 291
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 2 cut(s) 274, 307
AoxI GGCC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 271
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 116, 164
AsuC2I CCSGG 2 cut(s) 119, 277
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 293
BcnI CCSGG 2 cut(s) 119, 277
BcoDI GTCTC 2 cut(s) 274, 307
BfuAI ACCTGC 1 cut(s) 62
Bme1390I CCNGG 3 cut(s) 119, 277, 293
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 116, 164
BmiI GGNNCC 2 cut(s) 165, 353
BmrFI CCNGG 3 cut(s) 119, 277, 293
Bpu14I TTCGAA 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 119, 277
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 2 cut(s) 291, 292
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 2 cut(s) 291, 292
BseNI ACTGG 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 2 cut(s) 119, 276
BsmAI GTCTC 2 cut(s) 274, 307
BsmBI CGTCTC 1 cut(s) 307
BsnI GGCC 1 cut(s) 117
Bso31I GGTCTC 1 cut(s) 274
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 55, 354
BspANI GGCC 1 cut(s) 117
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 165, 353
BspMI ACCTGC 1 cut(s) 62
BspT104I TTCGAA 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 291, 292
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 51, 363
BstDEI CTNAG 2 cut(s) 39, 375
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 300
BstMAI GTCTC 2 cut(s) 274, 307
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 3 cut(s) 117, 275, 291
BstUI CGCG 1 cut(s) 300
BsuRI GGCC 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 71
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 51, 363
CfoI GCGC 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 116, 164
CseI GACGC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 153
CviAII CATG 3 cut(s) 83, 113, 308
CviJI RGCY 4 cut(s) 117, 122, 352, 365
CviKI_1 RGCY 4 cut(s) 117, 122, 352, 365
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 2 cut(s) 39, 375
Eco24I GRGCYC 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 307
FaeI CATG 3 cut(s) 86, 116, 311
FaiI YATR 4 cut(s) 84, 101, 114, 309
FatI CATG 3 cut(s) 82, 112, 307
FriOI GRGCYC 1 cut(s) 354
GlaI GCGC 1 cut(s) 299
HaeIII GGCC 1 cut(s) 117
HapII CCGG 2 cut(s) 119, 276
HgaI GACGC 1 cut(s) 289
HhaI GCGC 1 cut(s) 300
Hin1II CATG 3 cut(s) 86, 116, 311
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HpaII CCGG 2 cut(s) 119, 276
Hpy188I TCNGA 3 cut(s) 29, 175, 356
Hpy188III TCNNGA 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 2 cut(s) 71, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 2 cut(s) 39, 375
Hsp92II CATG 3 cut(s) 86, 116, 311
HspAI GCGC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 7 cut(s) 57, 77, 132, 278, 289, 297, 305
MaeIII GTNAC 2 cut(s) 184, 286
MhlI GDGCHC 2 cut(s) 55, 354
MluCI AATT 6 cut(s) 5, 59, 210, 271, 328, 345
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 2 cut(s) 100, 144
MspI CCGG 2 cut(s) 119, 276
MspR9I CCNGG 3 cut(s) 119, 277, 293
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 358
NciI CCSGG 2 cut(s) 119, 277
NlaIII CATG 3 cut(s) 86, 116, 311
NlaIV GGNNCC 2 cut(s) 165, 353
NspI RCATGY 1 cut(s) 86
NspV TTCGAA 1 cut(s) 180
PasI CCCWGGG 1 cut(s) 292
PfoI TCCNGGA 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 165, 353
PspPI GGNCC 2 cut(s) 116, 164
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
Sau96I GGNCC 2 cut(s) 116, 164
ScrFI CCNGG 3 cut(s) 119, 277, 293
SduI GDGCHC 2 cut(s) 55, 354
SetI ASST 2 cut(s) 76, 286
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 164
Sse9I AATT 6 cut(s) 5, 59, 210, 271, 328, 345
StyD4I CCNGG 3 cut(s) 117, 275, 291
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 180
TasI AATT 6 cut(s) 5, 59, 210, 271, 328, 345
TatI WGTACW 1 cut(s) 152
TscAI CASTG 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 271
XceI RCATGY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.