RchiOBHm_Chr5g0079661

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
85373576 .. 85374451
876 bp
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UTR
Exon/CDS
Intron
PRQ35404

Sequence Viewer

Length: 228 bp
ATGGACACTTTCGCTACTTGTAGTCGGAAGTACTACAGAGTAGTTGGCCGGTTCTCGAAGGATGACGAACCGAGTCGGTCACCGTTGTGTTTGAGTTTAGCCGGCAGTGTGCAGGTTTCGAGCATGTGGTCGGGAAGCGTACAGGGGAGGCACATGGCCCGGCTTGGCGCATTTCTCTGTAGTTTTATCAAAAGGAAGGTTTTGGTCCCTTATCGGATTTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.48

Weight (kDa)

10.23

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 46
AfaI GTAC 2 cut(s) 32, 141
AgsI TTSAA 1 cut(s) 223
AleI CACNNNNGTG 1 cut(s) 85
AoxI GGCC 2 cut(s) 46, 156
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 157, 205
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 72
AvaII GGWCC 1 cut(s) 205
BcnI CCSGG 1 cut(s) 160
BfmI CTRYAG 2 cut(s) 34, 178
BfuAI ACCTGC 1 cut(s) 103
BmcAI AGTACT 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 157, 205
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 160
Bse118I RCCGGY 2 cut(s) 48, 101
BseGI GGATG 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 131
BshFI GGCC 2 cut(s) 48, 158
BsiSI CCGG 3 cut(s) 49, 102, 160
BslFI GGGAC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 2 cut(s) 48, 158
BspANI GGCC 2 cut(s) 48, 158
BspLI GGNNCC 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 103
BsrFI RCCGGY 2 cut(s) 48, 101
BssAI RCCGGY 2 cut(s) 48, 101
Bst4CI ACNGT 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 103
BstEII GGTNACC 1 cut(s) 78
BstF5I GGATG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 127
BstPI GGTNACC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 2 cut(s) 34, 178
BsuRI GGCC 2 cut(s) 48, 158
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 2 cut(s) 48, 101
Cfr13I GGNCC 2 cut(s) 157, 205
Csp6I GTAC 2 cut(s) 31, 140
CviAII CATG 2 cut(s) 124, 154
CviJI RGCY 4 cut(s) 48, 101, 158, 163
CviKI_1 RGCY 4 cut(s) 48, 101, 158, 163
CviQI GTAC 2 cut(s) 31, 140
EaeI YGGCCR 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 205
Eco91I GGTNACC 1 cut(s) 78
EcoO65I GGTNACC 1 cut(s) 78
FaeI CATG 2 cut(s) 127, 157
FaiI YATR 2 cut(s) 125, 155
FaqI GGGAC 1 cut(s) 191
FatI CATG 2 cut(s) 123, 153
FokI GGATG 1 cut(s) 74
GlaI GCGC 1 cut(s) 169
HaeIII GGCC 2 cut(s) 48, 158
HapII CCGG 3 cut(s) 49, 102, 160
HhaI GCGC 1 cut(s) 170
Hin1II CATG 2 cut(s) 127, 157
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HinfI GANTC 1 cut(s) 73
HpaII CCGG 3 cut(s) 49, 102, 160
HphI GGTGA 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 27, 216
Hpy188III TCNNGA 2 cut(s) 55, 132
HpyAV CCTTC 2 cut(s) 52, 190
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 112
Hsp92II CATG 2 cut(s) 127, 157
HspAI GCGC 1 cut(s) 168
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
LpnPI CCDG 5 cut(s) 62, 98, 115, 128, 173
MaeIII GTNAC 1 cut(s) 78
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 1 cut(s) 141
MroNI GCCGGC 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 85
MspI CCGG 3 cut(s) 49, 102, 160
MspR9I CCNGG 1 cut(s) 160
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 160
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 2 cut(s) 127, 157
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 78
NspI RCATGY 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PspEI GGTNACC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 2 cut(s) 157, 205
RsaI GTAC 2 cut(s) 32, 141
RsaNI GTAC 2 cut(s) 31, 140
RseI CAYNNNNRTG 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 157, 205
ScaI AGTACT 1 cut(s) 32
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 160
SetI ASST 2 cut(s) 117, 201
SfcI CTRYAG 2 cut(s) 34, 178
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 56, 119
TaqII GACCGA 1 cut(s) 66
TatI WGTACW 1 cut(s) 30
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 78
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 205
XceI RCATGY 1 cut(s) 127
ZrmI AGTACT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.