Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004253

Physical Location & Seq

Genomic Coordinates Reverse (-)

27580131 .. 27581264

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00405160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTGTATTTGATTGCAGTGACAAGCACCGGTGGCTAACACCTCCGGGAGCTCCACCCAAAGACTCCTTGAAACCGGCACAAAGCGCGAGCTCATCCTCCTCCTCGGCAACACCATCTCCGATCCCAAACGTGTCTCCCTATCCGTTGCAGGGACTGGAGCGTTTGCACTTGGATTTGAACAAAGGATTAGAAGTCGATAACAAAACTAAGTGTGGGCAAGCACTCCATATCCAGATATATGTGTTTAGTGATATGTTCCTACGGGGTCGAAACCGTGAACCTCCAAATGGACAATATAACCATATGTCTTATAGATCCCGTGTCACTTTAGTAGTGTACGTTGGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.98

Weight (kDa)

9.0

Isoelectric Point (pI)

62.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004253)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341661 RchiOBHm_Chr3g0485461 RchiOBHm_Chr3g0496711 RchiOBHm_Chr3g0497561 RchiOBHm_Chr4g0399861 RchiOBHm_Chr5g0049551 RchiOBHm_Chr5g0056221 RchiOBHm_Chr5g0079661 RchiOBHm_Chr6g0245421 RchiOBHm_Chr6g0251521 RchiOBHm_Chr6g0271331 RchiOBHm_Chr6g0273341 RchiOBHm_Chr7g0183411 RchiOBHm_Chr7g0207781 RchiOBHm_Chr7g0234061
rosa_laevigata	RLG00000019701
rosa_multiflora	Rmu_sc0002986.1_g000038
rosa_roxburghii	Rroxscaffold_176G00431310 Rroxscaffold_1G00025630 Rroxscaffold_1G00032450 Rroxscaffold_3G00218140 Rroxscaffold_4G00319190 Rroxscaffold_5G00364950 Rroxscaffold_5G00372490 Rroxscaffold_6G00405160 Rroxscaffold_7G00163910
rosa_rugosa	Rorug05G0249500 Rorug05G0555600 Rorug06G0344700
rosa_samantha	Rh2BG593000 Rh4DG246600
rosa_wichuraiana	Rw0G005310 Rw1G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AclWI	GGATC	2 cut(s)	118, 312
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	152, 290
AflIII	ACRYGT	1 cut(s)	132
AgeI	ACCGGT	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	73, 181
AluBI	AGCT	2 cut(s)	53, 93
AluI	AGCT	2 cut(s)	53, 93
Alw21I	GWGCWC	2 cut(s)	55, 95
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	118, 312
AlwNI	CAGNNNCTG	1 cut(s)	157
AsiGI	ACCGGT	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	48
BanII	GRGCYC	2 cut(s)	55, 95
Bbv12I	GWGCWC	2 cut(s)	55, 95
BccI	CCATC	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 290
Bse118I	RCCGGY	2 cut(s)	30, 76
Bse1I	ACTGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	152, 290
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	2 cut(s)	91, 94
Bsh1236I	CGCG	1 cut(s)	89
BshTI	ACCGGT	1 cut(s)	30
BsiHKAI	GWGCWC	2 cut(s)	55, 95
BsiSI	CCGG	3 cut(s)	31, 47, 77
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	152, 290
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	55, 95
Bsp143I	GATC	2 cut(s)	123, 317
BspFNI	CGCG	1 cut(s)	89
BspPI	GGATC	2 cut(s)	118, 312
BsrFI	RCCGGY	2 cut(s)	30, 76
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	2 cut(s)	30, 76
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	123, 317
Bst4CI	ACNGT	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	91, 222
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	126, 320
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	123, 317
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 86
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	91, 222
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	2 cut(s)	30, 76
Csp6I	GTAC	1 cut(s)	340
CspAI	ACCGGT	1 cut(s)	30
CviJI	RGCY	4 cut(s)	5, 37, 53, 93
CviKI_1	RGCY	4 cut(s)	5, 37, 53, 93
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	125, 319
DpnII	GATC	2 cut(s)	123, 317
Ecl136II	GAGCTC	2 cut(s)	53, 93
Eco24I	GRGCYC	2 cut(s)	55, 95
Eco53kI	GAGCTC	2 cut(s)	53, 93
EcoICRI	GAGCTC	2 cut(s)	53, 93
EcoT38I	GRGCYC	2 cut(s)	55, 95
FaiI	YATR	8 cut(s)	231, 241, 243, 257, 300, 306, 308, 315
FaqI	GGGAC	1 cut(s)	168
FauNDI	CATATG	1 cut(s)	306
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	2 cut(s)	55, 95
GlaI	GCGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	179
HapII	CCGG	3 cut(s)	31, 47, 77
HhaI	GCGC	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	3 cut(s)	31, 47, 77
Hpy166II	GTNNAC	2 cut(s)	281, 340
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	281, 340
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	2 cut(s)	132, 342
HpyCH4V	TGCA	3 cut(s)	18, 151, 169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 86
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	2 cut(s)	132, 342
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	123, 317
LmnI	GCTCC	3 cut(s)	50, 58, 160
LpnPI	CCDG	6 cut(s)	44, 60, 90, 137, 143, 248
MaeII	ACGT	2 cut(s)	132, 342
MaeIII	GTNAC	2 cut(s)	20, 325
MalI	GATC	2 cut(s)	125, 319
MboI	GATC	2 cut(s)	123, 317
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	2 cut(s)	55, 95
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	5 cut(s)	54, 109, 112, 115, 294
MspI	CCGG	3 cut(s)	31, 47, 77
MspR9I	CCNGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	34, 86
NciI	CCSGG	1 cut(s)	48
NdeI	CATATG	1 cut(s)	306
NdeII	GATC	2 cut(s)	123, 317
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	2 cut(s)	20, 325
PfoI	TCCNGGA	1 cut(s)	46
PinAI	ACCGGT	1 cut(s)	30
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp124BI	GAGCTC	2 cut(s)	55, 95
PstNI	CAGNNNCTG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SacI	GAGCTC	2 cut(s)	55, 95
Sau3AI	GATC	2 cut(s)	123, 317
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	2 cut(s)	55, 95
SetI	ASST	6 cut(s)	46, 55, 95, 135, 286, 345
SgrAI	CRCCGGYG	1 cut(s)	30
SstI	GAGCTC	2 cut(s)	55, 95
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	2 cut(s)	135, 345
TaqI	TCGA	2 cut(s)	198, 271
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	2 cut(s)	20, 325
Tsp45I	GTSAC	2 cut(s)	20, 325
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.