RchiOBHm_Chr5g0049551

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
47267388 .. 47276171
8784 bp
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UTR
Exon/CDS
Intron
PRQ32719

Sequence Viewer

Length: 135 bp
ATGGGTTTCTACTTTGGAAAGGAGAATGGACTCGAGCATGTGCACATGGAATTGGACGAAGTATCCAAAGTCGGAAACGAAACTAGCTTGTGTGAGCACTCCATATCCAGGGTGACGTACCGAGCGATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

44

Amino Acids

4.99

Weight (kDa)

5.4

Isoelectric Point (pI)

1.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 108
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw21I GWGCWC 2 cut(s) 45, 99
Alw44I GTGCAC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 32
ApaLI GTGCAC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 45, 99
BciT130I CCWGG 1 cut(s) 109
BciVI GTATCC 1 cut(s) 73
BfaI CTAG 1 cut(s) 84
BfuI GTATCC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 45, 99
BsiHKCI CYCGRG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 45, 99
BssECI CCNNGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 109
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 45
BsuI GTATCC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 118
CviAII CATG 2 cut(s) 38, 46
CviJI RGCY 1 cut(s) 87
CviKI_1 RGCY 1 cut(s) 87
CviQI GTAC 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 107
FaeI CATG 2 cut(s) 41, 49
FaiI YATR 3 cut(s) 39, 47, 104
FatI CATG 2 cut(s) 37, 45
FspBI CTAG 1 cut(s) 84
Hin1II CATG 2 cut(s) 41, 49
HinfI GANTC 1 cut(s) 30
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 2 cut(s) 41, 49
LpnPI CCDG 2 cut(s) 94, 121
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 45, 99
MluCI AATT 1 cut(s) 50
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
NlaIII CATG 2 cut(s) 41, 49
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 41
PaeR7I CTCGAG 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspXI VCTCGAGB 1 cut(s) 32
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 2 cut(s) 45, 99
SetI ASST 2 cut(s) 89, 119
Sfr274I CTCGAG 1 cut(s) 32
SgeI CNNG 8 cut(s) 44, 46, 50, 58, 96, 100, 120, 121
SlaI CTCGAG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 1 cut(s) 50
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 50
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
VneI GTGCAC 1 cut(s) 41
XceI RCATGY 1 cut(s) 41
XhoI CTCGAG 1 cut(s) 32
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.