Rroxscaffold_4G00319190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004253
Physical Location & Seq
Forward (+)
46717540 .. 46738629
21090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00319190.1

Sequence Viewer

Length: 363 bp
ATGGGCTTGTTACCGATAAACATTTGGTGCAATGTGAGACCGAAACTAATGGAGCCGATAACTTGGAGCCATGGAAAGTTGAAATCGCCTACGACACTACGCTACAAAACAGTTGACAAAGACTTGAGCATGTGCACATGGATTTGGACAAATAATCGAAGGTCGGGAACGAACCCGAATGTGGACGAGCACTCCATATCCAGTAGGGTGGTTGACACGGCGTTGACCTCGGGGAAGAGTTTCGACCTCCCGGTAATCTCCTCCTCTTTGTTCCACGAAAGTTTGTCCTCCCGTCAGGTCAAGGAGGGTACGAAGATTACCCAAAATGAGTGGCCTGAAAATAGTGGTGACCGAGCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.61

Weight (kDa)

9.34

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
Alw21I GWGCWC 3 cut(s) 137, 192, 358
Alw26I GTCTC 1 cut(s) 31
Alw44I GTGCAC 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 1 cut(s) 332
ApaLI GTGCAC 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 358
Bbv12I GWGCWC 3 cut(s) 137, 192, 358
BceAI ACGGC 1 cut(s) 234
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 54, 68
BmrFI CCNGG 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 145
BpuMI CCSGG 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 70, 228
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 37
BseDI CCNNGG 2 cut(s) 70, 228
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 2 cut(s) 250, 253
BseSI GKGCMC 1 cut(s) 137
BshFI GGCC 1 cut(s) 334
BsiHKAI GWGCWC 3 cut(s) 137, 192, 358
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 31
BsnI GGCC 1 cut(s) 334
Bso31I GGTCTC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 229
Bsp1286I GDGCHC 3 cut(s) 137, 192, 358
Bsp19I CCATGG 1 cut(s) 70
BspANI GGCC 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 54, 68
BspTNI GGTCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 37
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 70, 228
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 70
BstEII GGTNACC 1 cut(s) 347
BstMAI GTCTC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 133
BstPI GGTNACC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 208
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 70
Csp6I GTAC 1 cut(s) 309
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviAII CATG 3 cut(s) 71, 130, 138
CviJI RGCY 5 cut(s) 6, 55, 69, 334, 356
CviKI_1 RGCY 5 cut(s) 6, 55, 69, 334, 356
CviQI GTAC 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 229
Eco91I GGTNACC 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 356
EcoO65I GGTNACC 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 3 cut(s) 74, 133, 141
FaiI YATR 4 cut(s) 72, 131, 139, 197
FatI CATG 3 cut(s) 70, 129, 137
FriOI GRGCYC 1 cut(s) 358
HaeIII GGCC 1 cut(s) 334
HapII CCGG 1 cut(s) 251
Hin1II CATG 3 cut(s) 74, 133, 141
HincII GTYRAC 3 cut(s) 115, 214, 225
HindII GTYRAC 3 cut(s) 115, 214, 225
HpaII CCGG 1 cut(s) 251
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 5 cut(s) 115, 135, 184, 214, 225
Hpy188III TCNNGA 1 cut(s) 165
Hpy8I GTNNAC 5 cut(s) 115, 135, 184, 214, 225
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 30, 135
Hsp92II CATG 3 cut(s) 74, 133, 141
LmnI GCTCC 2 cut(s) 52, 66
LpnPI CCDG 4 cut(s) 214, 264, 281, 348
MaeIII GTNAC 2 cut(s) 9, 347
MboII GAAGA 2 cut(s) 247, 325
MhlI GDGCHC 3 cut(s) 137, 192, 358
MnlI CCTC 6 cut(s) 238, 257, 271, 274, 298, 298
MroXI GAANNNNTTC 1 cut(s) 239
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 251
NciI CCSGG 1 cut(s) 251
NcoI CCATGG 1 cut(s) 70
NlaIII CATG 3 cut(s) 74, 133, 141
NlaIV GGNNCC 2 cut(s) 54, 68
NmuCI GTSAC 1 cut(s) 347
NspI RCATGY 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 358
PspEI GGTNACC 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 54, 68
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SacI GAGCTC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 3 cut(s) 137, 192, 358
SetI ASST 5 cut(s) 164, 230, 249, 300, 358
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
SstI GAGCTC 1 cut(s) 358
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 157, 243
TaqII GACCGA 1 cut(s) 55
TseFI GTSAC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 347
VneI GTGCAC 1 cut(s) 133
XceI RCATGY 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.