Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Forward (+)

1286876 .. 1289057

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGCTTAGCATCGAGCATTGCGACCCGGTTTTGGTGGCCTAGAAGGTCTGCGTCGGAGTCTACAAGGGCGTCACCACTAGCCAGCTTGATGAATTGGCTGCTGAGACCGCCAACCATGCACCCTGACTATGCCTGCTTGGCGGCAAGGATTGTTGTTTCAAACCTACACAAGAACACTAAGAAGTCCTTTTCAGAGACGGTCAAAATTATGTACAACCATGTCAATGATAGATCTGGGCTAGAAGCTCCTCTGATTGCTGATGATGTTTATGAAATCATCATGAAGCTTGATGACATAAAGAAAATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

104

Amino Acids

11.85

Weight (kDa)

9.46

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	2 cut(s)	110, 143
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	162
AluBI	AGCT	3 cut(s)	87, 248, 289
AluI	AGCT	3 cut(s)	87, 248, 289
Alw26I	GTCTC	2 cut(s)	100, 191
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	100, 191
BfaI	CTAG	3 cut(s)	42, 80, 242
BglI	GCCNNNNNGGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	233
BisI	GCNGC	2 cut(s)	101, 144
BlpI	GCTNAGC	1 cut(s)	7
BlsI	GCNGC	2 cut(s)	102, 145
Bme1390I	CCNGG	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	20
Bpu1102I	GCTNAGC	1 cut(s)	7
BpuMI	CCSGG	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	87
BshFI	GGCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmAI	GTCTC	2 cut(s)	100, 191
BsmBI	CGTCTC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	40
Bso31I	GGTCTC	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	233
Bsp1720I	GCTNAGC	1 cut(s)	7
BspACI	CCGC	2 cut(s)	110, 143
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	213
BssMI	GATC	1 cut(s)	233
BssNI	GRCGYC	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	202
BstACI	GRCGYC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	85, 136
BstDEI	CTNAG	3 cut(s)	7, 104, 180
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	2 cut(s)	100, 191
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 118, 140
BstSCI	CCNGG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	85, 136
CciI	TCATGA	1 cut(s)	282
CseI	GACGC	2 cut(s)	42, 60
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	3 cut(s)	118, 221, 283
CviJI	RGCY	8 cut(s)	6, 40, 83, 87, 100, 241, 248, 289
CviKI_1	RGCY	8 cut(s)	6, 40, 83, 87, 100, 241, 248, 289
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	7, 104, 180
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	3 cut(s)	121, 224, 286
FaiI	YATR	7 cut(s)	119, 132, 212, 222, 273, 284, 299
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	3 cut(s)	117, 220, 282
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	101, 144
Fsp4HI	GCNGC	2 cut(s)	101, 144
FspBI	CTAG	3 cut(s)	42, 80, 242
GluI	GCNGC	2 cut(s)	101, 144
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	2 cut(s)	42, 60
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	121, 224, 286
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	58, 196, 255
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	1 cut(s)	63
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	121, 310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 118, 140
HpyF3I	CTNAG	3 cut(s)	7, 104, 180
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	121, 224, 286
Kzo9I	GATC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	5 cut(s)	41, 97, 138, 148, 222
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	3 cut(s)	42, 80, 242
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MflI	RGATCY	1 cut(s)	233
MluCI	AATT	2 cut(s)	94, 207
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	109, 118, 140
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	3 cut(s)	121, 224, 286
NmuCI	GTSAC	1 cut(s)	72
PagI	TCATGA	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	102, 145
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	233
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	225
SatI	GCNGC	2 cut(s)	101, 144
Sau3AI	GATC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	5 cut(s)	50, 89, 168, 250, 291
SfaNI	GCATC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	94, 207
SsiI	CCGC	2 cut(s)	110, 143
SspMI	CTAG	3 cut(s)	42, 80, 242
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	14
TasI	AATT	2 cut(s)	94, 207
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	3 cut(s)	107, 288, 299
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	3 cut(s)	42, 80, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.