Rh2DG021100

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
1238840 .. 1239958
1119 bp
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UTR
Exon/CDS
Intron
Rh2DG021100.1

Sequence Viewer

Length: 333 bp
ATGCTTTTTAAGGATACTTGCAATAAGAAAAGCAATCAGCAAAATCTGGGAACCATAAAATGCTCAAACTTGGAGAAGGCTGTTCCTTTCGAGTCACATCCATCTAAGCTTGCTGGAAGCAGAGGTTCCAAAAATCACTACTTTGACTTTGACAAACTAGCAGAGGTCACTGCAATTGTCACTGTGAACCTCAACAAGATAATTGATGTTAACTACTATCCTGTTGAGAGTGCAAAGACGTCTAATTTACGACATATGCCATTTGGAACCCCATTGCTGATACCTTCATCTTGCTTGGCATGTCCTTTGATTCACCTGAGGCTCAACAACTGA

Protein Analysis

110

Amino Acids

12.26

Weight (kDa)

9.16

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuc_red_lgC PF02867 1 - 89 7.1e-16 Ribonucleotide reductase, barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 239
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 305
AxyI CCTNAGG 1 cut(s) 317
BccI CCATC 1 cut(s) 109
BciVI GTATCC 1 cut(s) 7
BfaI CTAG 1 cut(s) 158
BfuI GTATCC 1 cut(s) 7
BmiI GGNNCC 3 cut(s) 52, 127, 268
BsaHI GRCGYC 1 cut(s) 239
Bse21I CCTNAGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 272
BseGI GGATG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 52, 127, 268
BsrDI GCAATG 1 cut(s) 272
BssNI GRCGYC 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 105, 317
BstF5I GGATG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 303
Bsu36I CCTNAGG 1 cut(s) 317
BsuI GTATCC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 168, 180
Cac8I GCNNGC 1 cut(s) 111
CviAII CATG 1 cut(s) 300
CviJI RGCY 3 cut(s) 80, 109, 322
CviKI_1 RGCY 3 cut(s) 80, 109, 322
DdeI CTNAG 2 cut(s) 105, 317
Eco81I CCTNAGG 1 cut(s) 317
FaeI CATG 1 cut(s) 303
FaiI YATR 4 cut(s) 56, 255, 257, 301
FatI CATG 1 cut(s) 299
FauNDI CATATG 1 cut(s) 255
FokI GGATG 1 cut(s) 84
FspBI CTAG 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 1 cut(s) 303
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 92, 310
HpaI GTTAAC 1 cut(s) 211
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 187, 211
Hpy8I GTNNAC 2 cut(s) 187, 211
HpyAV CCTTC 2 cut(s) 70, 294
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 3 cut(s) 21, 173, 233
HpyF3I CTNAG 2 cut(s) 105, 317
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 1 cut(s) 303
KspAI GTTAAC 1 cut(s) 211
LpnPI CCDG 4 cut(s) 32, 99, 234, 329
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 3 cut(s) 93, 166, 178
MfeI CAATTG 1 cut(s) 174
MluCI AATT 3 cut(s) 174, 201, 244
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 4 cut(s) 116, 157, 200, 312
MseI TTAA 2 cut(s) 9, 210
MunI CAATTG 1 cut(s) 174
NdeI CATATG 1 cut(s) 255
NlaIII CATG 1 cut(s) 303
NlaIV GGNNCC 3 cut(s) 52, 127, 268
NmuCI GTSAC 3 cut(s) 93, 166, 178
NspI RCATGY 1 cut(s) 303
PfeI GAWTC 1 cut(s) 310
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspN4I GGNNCC 3 cut(s) 52, 127, 268
SaqAI TTAA 2 cut(s) 9, 210
SchI GAGTC 1 cut(s) 101
SetI ASST 7 cut(s) 111, 127, 168, 192, 242, 286, 318
Sse9I AATT 3 cut(s) 174, 201, 244
SspMI CTAG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 90
TasI AATT 3 cut(s) 174, 201, 244
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 9, 210
Tru9I TTAA 2 cut(s) 9, 210
TscAI CASTG 2 cut(s) 175, 187
TseFI GTSAC 3 cut(s) 93, 166, 178
Tsp45I GTSAC 3 cut(s) 93, 166, 178
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 2 cut(s) 175, 187
XceI RCATGY 1 cut(s) 303
XspI CTAG 1 cut(s) 158
ZraI GACGTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.