Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

14752196 .. 14755905

Gene Structure 3710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCTGTTATCAGCAAATCAGCTAGGGGAATTGGTGTCTCTCTTCACAACATTCGTGCCACAGGCAGTTATATTCATGGAACAGATGGGACATCCAACGGCATCATTCCGATGCTGCGAGTTTTTAATGATACTGCCCGTTATGTTGGAGGCAAGAGGAAAGGTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGATATATTTGATTTTCTGGATTTAAGGAAAAATCATGGGAAGGGAAAGGCCAAAAAGGTTGTTCCGGCACAGCAACTGTGGTTGGAAGTTTTGAAATCCCAGCGGAAGGAGAGAAAAATCGCTCCCAAAGTTCATAAGTCTCAAGCGCTTGAAGGGCCTTCAAGCTACGAAATAGCCGGTTCATCACCAACCTCAAGTCAAAGCACTCGTCACGTGTCAACCCTCGTGGCCATCATACGACTCAAGATCAAGCGTCAATCGCCTCGAGCCAAGTACACCATCGAGGACGACGACAGACGAGAGGGACGCAAGGACGGAAGAAACCTCTCCAAAGCTCGAAGTCTCCCAAGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

184

Amino Acids

20.42

Weight (kDa)

10.5

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_lgC	PF02867	4 - 84	1.9e-28	Ribonucleotide reductase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	426
AcvI	CACGTG	1 cut(s)	412
AfaI	GTAC	2 cut(s)	179, 473
AfeI	AGCGCT	1 cut(s)	345
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	3 cut(s)	292, 350, 360
AluBI	AGCT	4 cut(s)	23, 363, 533, 549
AluI	AGCT	4 cut(s)	23, 363, 533, 549
Alw26I	GTCTC	3 cut(s)	43, 342, 545
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	462
Aor51HI	AGCGCT	1 cut(s)	345
AoxI	GGCC	3 cut(s)	246, 353, 426
ApeKI	GCWGC	1 cut(s)	115
ArsI	GACNNNNNNTTYG	2 cut(s)	391, 423
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	375
AvaI	CYCGRG	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	428
BauI	CACGAG	2 cut(s)	422, 550
BbrPI	CACGTG	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	3 cut(s)	80, 437, 485
BceAI	ACGGC	1 cut(s)	115
BcoDI	GTCTC	3 cut(s)	43, 342, 545
BfaI	CTAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	347
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	2 cut(s)	102, 111
BpuEI	CTTGAG	3 cut(s)	324, 376, 425
BsaAI	YACGTR	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse118I	RCCGGY	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	3 cut(s)	248, 355, 428
BsiHKCI	CYCGRG	1 cut(s)	462
BsiSI	CCGG	2 cut(s)	263, 375
BslFI	GGGAC	2 cut(s)	103, 516
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	3 cut(s)	43, 342, 545
BsmFI	GGGAC	2 cut(s)	103, 516
BsnI	GGCC	3 cut(s)	248, 355, 428
BsoBI	CYCGRG	1 cut(s)	462
Bsp143I	GATC	1 cut(s)	444
Bsp19I	CCATGG	1 cut(s)	188
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	3 cut(s)	248, 355, 428
BspLI	GGNNCC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	444
BssSI	CACGAG	2 cut(s)	422, 550
BssT1I	CCWWGG	1 cut(s)	188
Bst2BI	CACGAG	2 cut(s)	422, 550
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	48
BstBAI	YACGTR	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	1 cut(s)	447
BstMAI	GTCTC	3 cut(s)	43, 342, 545
BstMBI	GATC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 457
BstNSI	RCATGY	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	248, 355, 428
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	195
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	346
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	2 cut(s)	440, 513
Csp6I	GTAC	2 cut(s)	178, 472
CspCI	CAANNNNNGTGG	2 cut(s)	405, 440
CviAII	CATG	4 cut(s)	77, 189, 194, 233
CviQI	GTAC	2 cut(s)	178, 472
DpnI	GATC	1 cut(s)	446
DpnII	GATC	1 cut(s)	444
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	188
Eco47III	AGCGCT	1 cut(s)	345
Eco72I	CACGTG	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	4 cut(s)	80, 192, 197, 236
FaiI	YATR	9 cut(s)	72, 78, 144, 190, 195, 203, 234, 333, 434
FaqI	GGGAC	2 cut(s)	103, 516
FatI	CATG	4 cut(s)	76, 188, 193, 232
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	248, 355, 428
HapII	CCGG	2 cut(s)	263, 375
HgaI	GACGC	2 cut(s)	440, 513
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	4 cut(s)	80, 192, 197, 236
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	2 cut(s)	263, 375
HphI	GGTGA	1 cut(s)	375
Hpy166II	GTNNAC	3 cut(s)	178, 417, 474
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	3 cut(s)	215, 442, 552
Hpy8I	GTNNAC	3 cut(s)	178, 417, 474
Hpy99I	CGWCG	1 cut(s)	491
HpyAV	CCTTC	4 cut(s)	232, 298, 344, 366
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 457
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	4 cut(s)	80, 192, 197, 236
HspAI	GCGC	1 cut(s)	344
Kzo9I	GATC	1 cut(s)	444
LmnI	GCTCC	2 cut(s)	184, 325
LpnPI	CCDG	5 cut(s)	48, 200, 276, 311, 388
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	2 cut(s)	102, 111
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	1 cut(s)	446
MboI	GATC	1 cut(s)	444
MboII	GAAGA	2 cut(s)	35, 528
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	1 cut(s)	30
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	3 cut(s)	120, 127, 261
MnlI	CCTC	8 cut(s)	143, 150, 400, 431, 471, 475, 493, 533
Mox20I	TGGCCA	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	2 cut(s)	126, 221
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	2 cut(s)	263, 375
MwoI	GCNNNNNNNGC	2 cut(s)	352, 457
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	1 cut(s)	444
NlaIII	CATG	4 cut(s)	80, 192, 197, 236
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	197
PaeI	GCATGC	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	1 cut(s)	432
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	432
Ppu21I	YACGTR	1 cut(s)	412
PspCI	CACGTG	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	353
PspXI	VCTCGAGB	1 cut(s)	462
PstNI	CAGNNNCTG	1 cut(s)	274
RsaI	GTAC	2 cut(s)	179, 473
RsaNI	GTAC	2 cut(s)	178, 472
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	126, 221
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	444
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	1 cut(s)	432
SetI	ASST	9 cut(s)	25, 166, 258, 365, 392, 414, 525, 535, 551
SfaNI	GCATC	2 cut(s)	102, 111
Sfr274I	CTCGAG	1 cut(s)	462
SlaI	CTCGAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	4 cut(s)	339, 391, 440, 462
SmoI	CTYRAG	4 cut(s)	339, 391, 440, 462
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	3 cut(s)	463, 480, 535
TasI	AATT	1 cut(s)	30
TatI	WGTACW	2 cut(s)	177, 471
Tru1I	TTAA	2 cut(s)	126, 221
Tru9I	TTAA	2 cut(s)	126, 221
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	65, 320, 369
TspGWI	ACGGA	1 cut(s)	528
XceI	RCATGY	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	462
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.