Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

1231703 .. 1238764

Gene Structure 7062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG021000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAAACATACCAGGGTTGTCCAGTTAGCAAGGGAATCCTTCAGCCAGACATGTGGGATCCAAATCCTTGGAAACAACGAGTGCTTTGAGCCATATACTTCCAATATCTACAGTCGCAGGGTTCTGAGCTGTGAATTTGTTGTGGTGAATAAACATCTTCTTCATGACTTGATTGAGATGGGTCTTTGGTCTCCGGCTTTTAAGAATAAGATAATCTATGAGGATGGCTCTGTTCAGAAAATCCCACAAATCCCTGATGATCTGAAAGCCATTTACAGAACTGTGTGGGAGATCAAGCAAAGAACATTGGTTGACATGGCTGTTGATAGGGGATGTTACATAGATCAGAGTCAAAGTGTGTCCGAGTCAGGATATGCTTCCATCACAACACTGAGCAGCCGCCTATGCAGGCAGCTTCCAGTCAGCATCAATGAAGTGCCCGGTAATAAACACATACCCCACCCCTTGAGAGGAAGGCCATACGTCCAAGAAAGGCGCGCAGACGCTTGCAGCTACGCCCTCAACAAGGTTACGTGGCAATTTAGCGCGCATCACTCAAAATGGTGGTTCTTGCAACAACTTTTGTGGTGTTACCGAGAAGTGGGAGGCGTTGGCAATTGTCTACTTGGTACGGTGCCTAACATTAAGTACTTGAGCTTCTGGTACTGTCACATTGATAAGAAACATCTCAGAAGTTCTATGGGGCCGCAAGGAGCTCGTGCTTCTGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

244

Amino Acids

28.04

Weight (kDa)

9.13

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_lgC	PF02867	21 - 120	5.3e-28	Ribonucleotide reductase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	634
AccI	GTMKAC	1 cut(s)	622
AccII	CGCG	2 cut(s)	498, 548
AciI	CCGC	2 cut(s)	400, 707
AclWI	GGATC	2 cut(s)	52, 65
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	25
AfaI	GTAC	3 cut(s)	631, 650, 665
AfiI	CCNNNNNNNGG	3 cut(s)	470, 526, 601
AflIII	ACRYGT	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	5 cut(s)	129, 415, 513, 657, 716
AluI	AGCT	5 cut(s)	129, 415, 513, 657, 716
Alw21I	GWGCWC	1 cut(s)	718
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	52, 65
AoxI	GGCC	2 cut(s)	476, 704
ApeKI	GCWGC	3 cut(s)	396, 412, 510
ApoI	RAATTY	1 cut(s)	134
AspLEI	GCGC	4 cut(s)	498, 500, 548, 550
AspS9I	GGNCC	1 cut(s)	704
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	441
BamHI	GGATCC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	634
BanII	GRGCYC	1 cut(s)	718
BarI	GAAGNNNNNNTAC	2 cut(s)	641, 673
BauI	CACGAG	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	718
BbvI	GCAGC	3 cut(s)	408, 424, 522
BccI	CCATC	3 cut(s)	172, 218, 389
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	109
BisI	GCNGC	5 cut(s)	397, 400, 413, 511, 707
BlsI	GCNGC	5 cut(s)	398, 401, 414, 512, 708
BmcAI	AGTACT	1 cut(s)	650
Bme1390I	CCNGG	2 cut(s)	13, 441
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	3 cut(s)	59, 636, 705
BmrFI	CCNGG	2 cut(s)	13, 441
BmsI	GCATC	2 cut(s)	435, 559
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpuEI	CTTGAG	2 cut(s)	487, 673
BpuMI	CCSGG	1 cut(s)	441
BsaAI	YACGTR	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	12, 67
Bsc4I	CCNNNNNNNGG	3 cut(s)	470, 526, 601
Bse1I	ACTGG	2 cut(s)	22, 419
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	12, 67
BseGI	GGATG	2 cut(s)	229, 338
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	3 cut(s)	470, 526, 601
BseMII	CTCAG	3 cut(s)	116, 383, 703
BseNI	ACTGG	2 cut(s)	22, 419
BsePI	GCGCGC	2 cut(s)	496, 546
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	3 cut(s)	408, 424, 522
Bsh1236I	CGCG	2 cut(s)	498, 548
BshFI	GGCC	2 cut(s)	478, 706
BshNI	GGYRCC	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	718
BsiSI	CCGG	2 cut(s)	194, 441
BslI	CCNNNNNNNGG	3 cut(s)	470, 526, 601
BsmAI	GTCTC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	478, 706
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	441, 718
Bsp143I	GATC	4 cut(s)	57, 259, 291, 343
BspACI	CCGC	2 cut(s)	400, 707
BspANI	GGCC	2 cut(s)	478, 706
BspCNI	CTCAG	3 cut(s)	117, 384, 702
BspFNI	CGCG	2 cut(s)	498, 548
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	59, 636, 705
BspPI	GGATC	2 cut(s)	52, 65
BspT107I	GGYRCC	1 cut(s)	634
BspTNI	GGTCTC	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	22, 419
BssECI	CCNNGG	2 cut(s)	12, 67
BssHII	GCGCGC	2 cut(s)	496, 546
BssMI	GATC	4 cut(s)	57, 259, 291, 343
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	1 cut(s)	67
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	4 cut(s)	113, 283, 634, 668
BstBAI	YACGTR	1 cut(s)	534
BstC8I	GCNNGC	4 cut(s)	410, 498, 508, 548
BstDEI	CTNAG	3 cut(s)	125, 392, 689
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	2 cut(s)	229, 338
BstFNI	CGCG	2 cut(s)	498, 548
BstHHI	GCGC	4 cut(s)	498, 500, 548, 550
BstKTI	GATC	4 cut(s)	60, 262, 294, 346
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	4 cut(s)	57, 259, 291, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNI	CCWGG	1 cut(s)	13
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	2 cut(s)	11, 439
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	441
BstUI	CGCG	2 cut(s)	498, 548
BstV1I	GCAGC	3 cut(s)	408, 424, 522
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	2 cut(s)	53, 68
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	478, 706
BtsCI	GGATG	2 cut(s)	229, 338
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	4 cut(s)	410, 498, 508, 548
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	4 cut(s)	498, 500, 548, 550
Cfr13I	GGNCC	1 cut(s)	704
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	3 cut(s)	630, 649, 664
CspCI	CAANNNNNGTGG	2 cut(s)	566, 601
CviAII	CATG	3 cut(s)	51, 164, 316
CviQI	GTAC	3 cut(s)	630, 649, 664
DdeI	CTNAG	3 cut(s)	125, 392, 689
DpnI	GATC	4 cut(s)	59, 261, 293, 345
DpnII	GATC	4 cut(s)	57, 259, 291, 343
Ecl136II	GAGCTC	1 cut(s)	716
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	718
Eco31I	GGTCTC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	716
Eco57I	CTGAAG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	716
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	3 cut(s)	54, 167, 319
FatI	CATG	3 cut(s)	50, 163, 315
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	5 cut(s)	397, 400, 413, 511, 707
FokI	GGATG	2 cut(s)	236, 345
FriOI	GRGCYC	1 cut(s)	718
Fsp4HI	GCNGC	5 cut(s)	397, 400, 413, 511, 707
GlaI	GCGC	4 cut(s)	497, 499, 547, 549
GluI	GCNGC	5 cut(s)	397, 400, 413, 511, 707
HaeIII	GGCC	2 cut(s)	478, 706
HapII	CCGG	2 cut(s)	194, 441
HgaI	GACGC	1 cut(s)	512
HhaI	GCGC	4 cut(s)	498, 500, 548, 550
Hin1II	CATG	3 cut(s)	54, 167, 319
Hin6I	GCGC	4 cut(s)	496, 498, 546, 548
HinP1I	GCGC	4 cut(s)	496, 498, 546, 548
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	3 cut(s)	35, 349, 365
HpaII	CCGG	2 cut(s)	194, 441
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	313, 623
Hpy188I	TCNGA	6 cut(s)	126, 237, 264, 348, 364, 692
Hpy188III	TCNNGA	2 cut(s)	164, 369
Hpy8I	GTNNAC	2 cut(s)	313, 623
HpyAV	CCTTC	2 cut(s)	49, 468
HpyCH4III	ACNGT	4 cut(s)	113, 283, 634, 668
HpyCH4IV	ACGT	2 cut(s)	483, 533
HpyCH4V	TGCA	3 cut(s)	408, 510, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	3 cut(s)	125, 392, 689
HpySE526I	ACGT	2 cut(s)	483, 533
Hsp92II	CATG	3 cut(s)	54, 167, 319
HspAI	GCGC	4 cut(s)	496, 498, 546, 548
Kzo9I	GATC	4 cut(s)	57, 259, 291, 343
LmnI	GCTCC	1 cut(s)	713
Lsp1109I	GCAGC	3 cut(s)	408, 424, 522
LweI	GCATC	2 cut(s)	435, 559
MaeII	ACGT	2 cut(s)	483, 533
MaeIII	GTNAC	4 cut(s)	335, 529, 590, 668
MalI	GATC	4 cut(s)	59, 261, 293, 345
MboI	GATC	4 cut(s)	57, 259, 291, 343
MboII	GAAGA	2 cut(s)	149, 152
MfeI	CAATTG	1 cut(s)	616
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	441, 718
MluCI	AATT	3 cut(s)	134, 539, 616
MlyI	GAGTC	2 cut(s)	358, 374
MnlI	CCTC	4 cut(s)	214, 464, 530, 599
MseI	TTAA	2 cut(s)	201, 645
MspI	CCGG	2 cut(s)	194, 441
MspR9I	CCNGG	2 cut(s)	13, 441
MunI	CAATTG	1 cut(s)	616
MvaI	CCWGG	1 cut(s)	13
MvnI	CGCG	2 cut(s)	498, 548
MwoI	GCNNNNNNNGC	1 cut(s)	405
NciI	CCSGG	1 cut(s)	441
NdeII	GATC	4 cut(s)	57, 259, 291, 343
NlaIII	CATG	3 cut(s)	54, 167, 319
NlaIV	GGNNCC	3 cut(s)	59, 636, 705
NmuCI	GTSAC	1 cut(s)	668
NspI	RCATGY	1 cut(s)	54
PagI	TCATGA	1 cut(s)	163
PauI	GCGCGC	2 cut(s)	496, 546
PciI	ACATGT	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	398, 401, 414, 512, 708
PleI	GAGTC	2 cut(s)	357, 373
PpsI	GAGTC	2 cut(s)	357, 373
Ppu21I	YACGTR	1 cut(s)	534
PscI	ACATGT	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	3 cut(s)	59, 636, 705
PspPI	GGNCC	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	57
PteI	GCGCGC	2 cut(s)	496, 546
RsaI	GTAC	3 cut(s)	631, 650, 665
RsaNI	GTAC	3 cut(s)	630, 649, 664
SacI	GAGCTC	1 cut(s)	718
SaqAI	TTAA	2 cut(s)	201, 645
SatI	GCNGC	5 cut(s)	397, 400, 413, 511, 707
Sau3AI	GATC	4 cut(s)	57, 259, 291, 343
Sau96I	GGNCC	1 cut(s)	704
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	2 cut(s)	358, 374
ScrFI	CCNGG	2 cut(s)	13, 441
SduI	GDGCHC	2 cut(s)	441, 718
SetI	ASST	8 cut(s)	131, 417, 486, 515, 531, 536, 659, 718
SfaNI	GCATC	2 cut(s)	435, 559
SfcI	CTRYAG	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	466, 652
SmoI	CTYRAG	2 cut(s)	466, 652
Sse9I	AATT	3 cut(s)	134, 539, 616
SsiI	CCGC	2 cut(s)	400, 707
SstI	GAGCTC	1 cut(s)	718
StyD4I	CCNGG	2 cut(s)	11, 439
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	4 cut(s)	113, 283, 634, 668
TaiI	ACGT	2 cut(s)	486, 536
TasI	AATT	3 cut(s)	134, 539, 616
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	2 cut(s)	402, 709
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	201, 645
Tru9I	TTAA	2 cut(s)	201, 645
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	3 cut(s)	396, 412, 510
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	3 cut(s)	17, 152, 447
TspRI	CASTG	1 cut(s)	396
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	622
ZrmI	AGTACT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.