Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Forward (+)

37743199 .. 37748849

Gene Structure 5651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG308200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1962 bp

ATGTATGTGGTGAAGAGAGACGGGCGCCAGGAGGCGGTCCATTTCGACAAGATTACGGCCCGGTTGAAGAAGCTCAGCTATGGGCTTAGCATCGAGCATTGCGACCCGGTTTTGGTGGCCCAGAAGGTCTGCGCCGGAGTCTACAAGGGCGTCACCACCAGCCAGCTTGATGAATTGGCTGCTGAGACCGCCGCCGCTATGACCGCCAACCACCCTGACTATGCCTGCTTGGCGGCAAGGATTGTTGTTTCAAACCTACACAAGAACACTAAGAAGTCCTTTTCGGAGACGGTCAAAATTATGTACAACCATGTCAATGATAGGTCTGGGCTGGAAGCTCCTCTGATTGCTGATGATGTTTATGAAATCATCATGAAGAATGCGGTGTGTTTGGACAGTGAGATCATTTACGACCGGGACTTTGACTACGACTACTTTGGTTTCAAGACTCTTGAGAGGTCTTACCTCTTAAAGGTTCATGGGAAGGTTGTAGAAAGGCCTCAACACATGCTAATGAGGGTTGCTGTTGGAATACACAAGAATGATATTGATTCTGTTATCAGAACATACCATCTCATGTCTCAACGATGGTTCACTCATGCTTCTCCCACCCTTTTCAATTCTGGAACGCCAAGGCCTCAATTGAGTAGCTGCTTCCTTGTTTGCATGAAAGATGATAGCATTGAAGGCATATATGATACCTTGAAGGAATGTGCTGTTATCAGCAAATCAGCTGGGGGAATTGGTGTCTCTGTTCACAACATTCGTGCCACTGGCAGTTACATTCGTGGAACAAATGGGACATCCAATGGCATCATTCCGATGCTACGAGTTTTTAATGATACTGCTCGTTATGTTGATCAGGGGGGAGGCAAAAGGAAAGGTGCTTTTGCTGTGTACTTGGAGCCCTGGCATGCTGATATATTTGACTTTCTGGATCTAAGGAAAAATCATGGAAAGGAAGAGAATAGAGCTCGTGATCTTTTTTATGCTCTTTGGGTGCCTGATCTGTTCATGAAAAGAGTTGAAAGCAATGGAGATTGGTCATTATTTTGTCCTAATGAGTCTCCAGGTTTGGCAGATTGTTGGGGTGAAAAATTTGAGGAACTGTACACTCGTTATGAAAGAGAGGGAAAGGCCAAAAAGGTTGTCCCGGCACAGCAACTGTGGTTTGAAGTTTTGAAATCCCAGATAGAAACAGGAACTCCCTACATGCTTTTTAAGGATACTTGCAATAAGAAAAGCAATCAGCAAAATCTGGGAACCATAAAATGCTCAAACTTGTGTACTGAGATAGTTGAGTACACTAGTCCAACAGAAACTGCTGTATGCAACCTGGCATCAATTGCTCTACCAAGATTTGTCAGGGAGAAGGCTGTTCCTTTCGAGTCACATCCATCTAAGCTTGCTGGAAGCAAAGGTTCCAAAAATCGCTACTTTGACTTTGACAAACTAGCAGAGGTCACTGCAATTGTCACTGTAAACCTCAACAAGATAATTGATGTTAACTACTACCCTGTTGAGAGTGCAAAGACGTCTAATTTACGACATAGGCCAATTGGGATTGGGGTTCAGGGTCTTGCTGATACCTTCATCTTGCTTGGCATGTCCTTTGATTCGCCTGAGGCTCAACAACTGAATAAGGACATTTTTGAGACCATTTACTACCATGCTCTGAAAGCTTCTTCTGAGTTAGCATCAAAAGAAGGCCCATATGAAACATACCAGGGTTGTCCAGTTAGCAAGGGAATTCTTCAGCCAGACATGTGGGATGTAAAACCCTCAGATCGATGGGATTGGGGTGCTGTTCGGGAAATGATATCACAGAATGGAATCAGAAATTCACTGCTTGTTGCCCCCATGCCTACTGCTTCAACTAGCCAAATCCTTGGAAACAATGAGTGCTTTGAGCCATATACTTCCAATATCTACAGTCGCAGGGTTCTGAGGTTTGCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

653

Amino Acids

73.54

Weight (kDa)

7.52

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-cone	PF03477	1 - 88	4.7e-14	ATP cone domain
Ribonuc_red_lgN	PF00317	142 - 212	2.4e-24	Ribonucleotide reductase, all-alpha domain
Ribonuc_red_lgC	PF02867	216 - 649	2.1e-180	Ribonucleotide reductase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1538
AccB1I	GGYRCC	2 cut(s)	24, 1000
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	7 cut(s)	35, 189, 192, 195, 204, 233, 383
AclWI	GGATC	1 cut(s)	945
AcsI	RAATTY	3 cut(s)	1097, 1749, 1840
AcuI	CTGAAG	1 cut(s)	1739
AcyI	GRCGYC	3 cut(s)	25, 150, 1535
AfaI	GTAC	5 cut(s)	305, 899, 1112, 1288, 1304
AfiI	CCNNNNNNNGG	3 cut(s)	34, 112, 472
AflIII	ACRYGT	1 cut(s)	1764
AhlI	ACTAGT	1 cut(s)	1307
AjnI	CCWGG	5 cut(s)	27, 908, 1069, 1335, 1725
AluBI	AGCT	9 cut(s)	73, 78, 166, 338, 651, 734, 974, 1405, 1682
AluI	AGCT	9 cut(s)	73, 78, 166, 338, 651, 734, 974, 1405, 1682
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	7 cut(s)	12, 179, 281, 585, 754, 1071, 1649
AlwI	GGATC	1 cut(s)	945
AlwNI	CAGNNNCTG	2 cut(s)	1165, 1322
AoxI	GGCC	7 cut(s)	57, 117, 497, 635, 1137, 1553, 1708
ApeKI	GCWGC	2 cut(s)	179, 651
ApoI	RAATTY	3 cut(s)	1097, 1749, 1840
ArsI	GACNNNNNNTTYG	4 cut(s)	404, 436, 1134, 1166
AspLEI	GCGC	2 cut(s)	27, 134
AspS9I	GGNCC	4 cut(s)	37, 58, 118, 1709
AsuC2I	CCSGG	4 cut(s)	61, 107, 416, 1154
AsuHPI	GGTGA	3 cut(s)	22, 145, 1103
AvaII	GGWCC	1 cut(s)	37
AxyI	CCTNAGG	1 cut(s)	1623
BanI	GGYRCC	2 cut(s)	24, 1000
BanII	GRGCYC	2 cut(s)	909, 976
BauI	CACGAG	1 cut(s)	975
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	2 cut(s)	166, 638
BccI	CCATC	4 cut(s)	579, 582, 1405, 1785
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	5 cut(s)	29, 910, 1071, 1337, 1727
BciVI	GTATCC	1 cut(s)	1219
BclI	TGATCA	1 cut(s)	859
BcnI	CCSGG	4 cut(s)	61, 107, 416, 1154
BcoDI	GTCTC	7 cut(s)	12, 179, 281, 585, 754, 1071, 1649
BcuI	ACTAGT	1 cut(s)	1307
BfaI	CTAG	4 cut(s)	1308, 1454, 1878, 1960
BfmI	CTRYAG	1 cut(s)	1930
BfoI	RGCGCY	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	1219
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	5 cut(s)	180, 192, 195, 234, 652
BlpI	GCTNAGC	2 cut(s)	74, 86
BlsI	GCNGC	5 cut(s)	181, 193, 196, 235, 653
Bme1390I	CCNGG	9 cut(s)	29, 61, 107, 416, 910, 1071, 1154, 1337, 1727
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	4 cut(s)	37, 58, 118, 1709
BmiI	GGNNCC	5 cut(s)	26, 906, 1002, 1264, 1423
BmrFI	CCNGG	9 cut(s)	29, 61, 107, 416, 910, 1071, 1154, 1337, 1727
BmsI	GCATC	5 cut(s)	99, 813, 822, 1349, 1706
BpmI	CTGGAG	1 cut(s)	1053
Bpu1102I	GCTNAGC	2 cut(s)	74, 86
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	4 cut(s)	61, 107, 416, 1154
Bsa29I	ATCGAT	1 cut(s)	1789
BsaHI	GRCGYC	3 cut(s)	25, 150, 1535
BsaI	GGTCTC	2 cut(s)	179, 1649
BsaJI	CCNNGG	4 cut(s)	632, 908, 1726, 1888
BsaXI	ACNNNNNCTCC	2 cut(s)	1189, 1219
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 112, 472
Bse1I	ACTGG	2 cut(s)	778, 1736
Bse21I	CCTNAGG	1 cut(s)	1623
Bse3DI	GCAATG	2 cut(s)	97, 1039
BseBI	CCWGG	5 cut(s)	29, 910, 1071, 1337, 1727
BseCI	ATCGAT	1 cut(s)	1789
BseDI	CCNNGG	4 cut(s)	632, 908, 1726, 1888
BseGI	GGATG	3 cut(s)	803, 1393, 1777
BseLI	CCNNNNNNNGG	3 cut(s)	34, 112, 472
BseMI	GCAATG	2 cut(s)	97, 1039
BseMII	CTCAG	7 cut(s)	88, 174, 1281, 1614, 1680, 1797, 1937
BseNI	ACTGG	2 cut(s)	778, 1736
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	166, 638
BseYI	CCCAGC	1 cut(s)	734
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	7 cut(s)	59, 119, 499, 637, 1139, 1555, 1710
BshNI	GGYRCC	2 cut(s)	24, 1000
BshVI	ATCGAT	1 cut(s)	1789
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	976
BsiSI	CCGG	5 cut(s)	61, 107, 135, 415, 1154
BslFI	GGGAC	3 cut(s)	431, 814, 1136
BslI	CCNNNNNNNGG	3 cut(s)	34, 112, 472
BsmAI	GTCTC	7 cut(s)	12, 179, 281, 585, 754, 1071, 1649
BsmBI	CGTCTC	2 cut(s)	12, 281
BsmFI	GGGAC	3 cut(s)	431, 814, 1136
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	7 cut(s)	59, 119, 499, 637, 1139, 1555, 1710
Bso31I	GGTCTC	2 cut(s)	179, 1649
Bsp1286I	GDGCHC	2 cut(s)	909, 976
Bsp1407I	TGTACA	2 cut(s)	303, 1110
Bsp143I	GATC	6 cut(s)	402, 859, 937, 979, 1006, 1786
Bsp1720I	GCTNAGC	2 cut(s)	74, 86
BspACI	CCGC	7 cut(s)	35, 189, 192, 195, 204, 233, 383
BspANI	GGCC	7 cut(s)	59, 119, 499, 637, 1139, 1555, 1710
BspCNI	CTCAG	7 cut(s)	87, 175, 1282, 1615, 1681, 1796, 1938
BspDI	ATCGAT	1 cut(s)	1789
BspHI	TCATGA	2 cut(s)	372, 1014
BspLI	GGNNCC	5 cut(s)	26, 906, 1002, 1264, 1423
BspPI	GGATC	1 cut(s)	945
BspT107I	GGYRCC	2 cut(s)	24, 1000
BspTNI	GGTCTC	2 cut(s)	179, 1649
BsrDI	GCAATG	2 cut(s)	97, 1039
BsrGI	TGTACA	2 cut(s)	303, 1110
BsrI	ACTGG	2 cut(s)	778, 1736
BssECI	CCNNGG	4 cut(s)	632, 908, 1726, 1888
BssMI	GATC	6 cut(s)	402, 859, 937, 979, 1006, 1786
BssNI	GRCGYC	3 cut(s)	25, 150, 1535
BssSI	CACGAG	1 cut(s)	975
BssT1I	CCWWGG	2 cut(s)	632, 1888
Bst2BI	CACGAG	1 cut(s)	975
Bst2UI	CCWGG	5 cut(s)	29, 910, 1071, 1337, 1727
Bst4CI	ACNGT	6 cut(s)	292, 398, 1110, 1167, 1480, 1934
Bst6I	CTCTTC	2 cut(s)	8, 957
BstACI	GRCGYC	3 cut(s)	25, 150, 1535
BstAPI	GCANNNNNTGC	1 cut(s)	1346
BstAUI	TGTACA	2 cut(s)	303, 1110
BstC8I	GCNNGC	4 cut(s)	164, 226, 915, 1407
BstENI	CCTNNNNNAGG	1 cut(s)	470
BstF5I	GGATG	3 cut(s)	803, 1393, 1777
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	27, 134
BstKTI	GATC	6 cut(s)	405, 862, 940, 982, 1009, 1789
BstMAI	GTCTC	7 cut(s)	12, 179, 281, 585, 754, 1071, 1649
BstMBI	GATC	6 cut(s)	402, 859, 937, 979, 1006, 1786
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	6 cut(s)	188, 203, 230, 687, 1346, 1679
BstNI	CCWGG	5 cut(s)	29, 910, 1071, 1337, 1727
BstNSI	RCATGY	5 cut(s)	511, 917, 1216, 1609, 1768
BstSCI	CCNGG	9 cut(s)	27, 59, 105, 414, 908, 1069, 1152, 1335, 1725
BstSFI	CTRYAG	1 cut(s)	1930
BstV1I	GCAGC	2 cut(s)	166, 638
BstX2I	RGATCY	1 cut(s)	937
BstXI	CCANNNNNNTGG	2 cut(s)	1767, 1889
BstYI	RGATCY	1 cut(s)	937
Bsu15I	ATCGAT	1 cut(s)	1789
Bsu36I	CCTNAGG	1 cut(s)	1623
BsuI	GTATCC	1 cut(s)	1219
BsuRI	GGCC	7 cut(s)	59, 119, 499, 637, 1139, 1555, 1710
BsuTUI	ATCGAT	1 cut(s)	1789
BtsCI	GGATG	3 cut(s)	803, 1393, 1777
BtsI	GCAGTG	2 cut(s)	1464, 1844
BtsIMutI	CAGTG	5 cut(s)	403, 771, 1464, 1476, 1844
Cac8I	GCNNGC	4 cut(s)	164, 226, 915, 1407
CaiI	CAGNNNCTG	2 cut(s)	1165, 1322
CciI	TCATGA	2 cut(s)	372, 1014
CfoI	GCGC	2 cut(s)	27, 134
Cfr13I	GGNCC	4 cut(s)	37, 58, 118, 1709
ClaI	ATCGAT	1 cut(s)	1789
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	5 cut(s)	304, 898, 1111, 1287, 1303
CviQI	GTAC	5 cut(s)	304, 898, 1111, 1287, 1303
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	6 cut(s)	404, 861, 939, 981, 1008, 1788
DpnII	GATC	6 cut(s)	402, 859, 937, 979, 1006, 1786
Eam1104I	CTCTTC	2 cut(s)	8, 957
EarI	CTCTTC	2 cut(s)	8, 957
Ecl136II	GAGCTC	1 cut(s)	974
Eco130I	CCWWGG	2 cut(s)	632, 1888
Eco147I	AGGCCT	2 cut(s)	499, 637
Eco24I	GRGCYC	2 cut(s)	909, 976
Eco31I	GGTCTC	2 cut(s)	179, 1649
Eco32I	GATATC	1 cut(s)	1821
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	974
Eco57I	CTGAAG	1 cut(s)	1739
Eco81I	CCTNAGG	1 cut(s)	1623
EcoICRI	GAGCTC	1 cut(s)	974
EcoNI	CCTNNNNNAGG	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	1749
EcoRII	CCWGG	5 cut(s)	27, 908, 1069, 1335, 1725
EcoRV	GATATC	1 cut(s)	1821
EcoT14I	CCWWGG	2 cut(s)	632, 1888
EcoT38I	GRGCYC	2 cut(s)	909, 976
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
ErhI	CCWWGG	2 cut(s)	632, 1888
Esp3I	CGTCTC	2 cut(s)	12, 281
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	3 cut(s)	431, 814, 1136
FauNDI	CATATG	1 cut(s)	1714
FbaI	TGATCA	1 cut(s)	859
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	180, 192, 195, 234, 652
FokI	GGATG	3 cut(s)	790, 1380, 1784
FriOI	GRGCYC	2 cut(s)	909, 976
Fsp4HI	GCNGC	5 cut(s)	180, 192, 195, 234, 652
FspBI	CTAG	4 cut(s)	1308, 1454, 1878, 1960
GlaI	GCGC	2 cut(s)	26, 133
GluI	GCNGC	5 cut(s)	180, 192, 195, 234, 652
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	1 cut(s)	1053
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	7 cut(s)	59, 119, 499, 637, 1139, 1555, 1710
HapII	CCGG	5 cut(s)	61, 107, 135, 415, 1154
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	2 cut(s)	27, 134
Hin1I	GRCGYC	3 cut(s)	25, 150, 1535
Hin6I	GCGC	2 cut(s)	25, 132
HinP1I	GCGC	2 cut(s)	25, 132
HincII	GTYRAC	1 cut(s)	1507
HindII	GTYRAC	1 cut(s)	1507
HindIII	AAGCTT	2 cut(s)	1403, 1680
HinfI	GANTC	7 cut(s)	138, 448, 551, 1064, 1388, 1616, 1833
HpaI	GTTAAC	1 cut(s)	1507
HpaII	CCGG	5 cut(s)	61, 107, 135, 415, 1154
HphI	GGTGA	3 cut(s)	22, 145, 1103
Hpy166II	GTNNAC	9 cut(s)	142, 594, 757, 898, 1113, 1287, 1305, 1483, 1507
Hpy188I	TCNGA	9 cut(s)	286, 345, 563, 822, 1677, 1690, 1786, 1838, 1947
Hpy188III	TCNNGA	8 cut(s)	373, 445, 452, 624, 935, 977, 1015, 1811
Hpy8I	GTNNAC	9 cut(s)	142, 594, 757, 898, 1113, 1287, 1305, 1483, 1507
HpyAV	CCTTC	7 cut(s)	118, 478, 680, 700, 1366, 1600, 1700
HpyCH4III	ACNGT	6 cut(s)	292, 398, 1110, 1167, 1480, 1934
HpyCH4IV	ACGT	1 cut(s)	1535
HpyCH4V	TGCA	5 cut(s)	666, 1233, 1332, 1469, 1529
HpyF10VI	GCNNNNNNNGC	6 cut(s)	188, 203, 230, 687, 1346, 1679
HpySE526I	ACGT	1 cut(s)	1535
Hsp92I	GRCGYC	3 cut(s)	25, 150, 1535
HspAI	GCGC	2 cut(s)	25, 132
KasI	GGCGCC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	859
KspAI	GTTAAC	1 cut(s)	1507
Kzo9I	GATC	6 cut(s)	402, 859, 937, 979, 1006, 1786
LmnI	GCTCC	2 cut(s)	343, 904
Lsp1109I	GCAGC	2 cut(s)	166, 638
LweI	GCATC	5 cut(s)	99, 813, 822, 1349, 1706
MaeI	CTAG	4 cut(s)	1308, 1454, 1878, 1960
MaeII	ACGT	1 cut(s)	1535
MaeIII	GTNAC	5 cut(s)	151, 779, 1389, 1462, 1474
MalI	GATC	6 cut(s)	404, 861, 939, 981, 1008, 1788
MboI	GATC	6 cut(s)	402, 859, 937, 979, 1006, 1786
MboII	GAAGA	6 cut(s)	25, 79, 388, 974, 1677, 1745
MfeI	CAATTG	4 cut(s)	641, 1344, 1470, 1557
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	2 cut(s)	909, 976
Mly113I	GGCGCC	1 cut(s)	25
MlyI	GAGTC	4 cut(s)	147, 442, 1073, 1397
MmeI	TCCRAC	2 cut(s)	508, 1337
MseI	TTAA	4 cut(s)	470, 837, 1221, 1506
MslI	CAYNNNNRTG	4 cut(s)	315, 512, 540, 821
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	5 cut(s)	61, 107, 135, 415, 1154
MspR9I	CCNGG	9 cut(s)	29, 61, 107, 416, 910, 1071, 1154, 1337, 1727
MunI	CAATTG	4 cut(s)	641, 1344, 1470, 1557
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	5 cut(s)	29, 910, 1071, 1337, 1727
MwoI	GCNNNNNNNGC	6 cut(s)	188, 203, 230, 687, 1346, 1679
NarI	GGCGCC	1 cut(s)	25
NciI	CCSGG	4 cut(s)	61, 107, 416, 1154
NdeI	CATATG	1 cut(s)	1714
NdeII	GATC	6 cut(s)	402, 859, 937, 979, 1006, 1786
NlaIV	GGNNCC	5 cut(s)	26, 906, 1002, 1264, 1423
NmuCI	GTSAC	4 cut(s)	151, 1389, 1462, 1474
NspI	RCATGY	5 cut(s)	511, 917, 1216, 1609, 1768
PaeI	GCATGC	1 cut(s)	917
PagI	TCATGA	2 cut(s)	372, 1014
PceI	AGGCCT	2 cut(s)	499, 637
PciI	ACATGT	1 cut(s)	1764
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	551, 1616, 1833
PkrI	GCNGC	5 cut(s)	181, 193, 196, 235, 653
PleI	GAGTC	4 cut(s)	146, 442, 1072, 1396
PluTI	GGCGCC	1 cut(s)	28
PpsI	GAGTC	4 cut(s)	146, 442, 1072, 1396
PscI	ACATGT	1 cut(s)	1764
Psp124BI	GAGCTC	1 cut(s)	976
Psp6I	CCWGG	5 cut(s)	27, 908, 1069, 1335, 1725
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	5 cut(s)	27, 908, 1069, 1335, 1725
PspN4I	GGNNCC	5 cut(s)	26, 906, 1002, 1264, 1423
PspPI	GGNCC	4 cut(s)	37, 58, 118, 1709
PstNI	CAGNNNCTG	2 cut(s)	1165, 1322
PsuI	RGATCY	1 cut(s)	937
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	5 cut(s)	305, 899, 1112, 1288, 1304
RsaNI	GTAC	5 cut(s)	304, 898, 1111, 1287, 1303
RseI	CAYNNNNRTG	4 cut(s)	315, 512, 540, 821
SacI	GAGCTC	1 cut(s)	976
SaqAI	TTAA	4 cut(s)	470, 837, 1221, 1506
SatI	GCNGC	5 cut(s)	180, 192, 195, 234, 652
Sau3AI	GATC	6 cut(s)	402, 859, 937, 979, 1006, 1786
Sau96I	GGNCC	4 cut(s)	37, 58, 118, 1709
SchI	GAGTC	4 cut(s)	147, 442, 1073, 1397
ScrFI	CCNGG	9 cut(s)	29, 61, 107, 416, 910, 1071, 1154, 1337, 1727
SduI	GDGCHC	2 cut(s)	909, 976
SfaNI	GCATC	5 cut(s)	99, 813, 822, 1349, 1706
SfcI	CTRYAG	1 cut(s)	1930
SfoI	GGCGCC	1 cut(s)	26
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	4 cut(s)	315, 512, 540, 821
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SpeI	ACTAGT	1 cut(s)	1307
SphI	GCATGC	1 cut(s)	917
SseBI	AGGCCT	2 cut(s)	499, 637
SsiI	CCGC	7 cut(s)	35, 189, 192, 195, 204, 233, 383
SspDI	GGCGCC	1 cut(s)	24
SspMI	CTAG	4 cut(s)	1308, 1454, 1878, 1960
SstI	GAGCTC	1 cut(s)	976
StuI	AGGCCT	2 cut(s)	499, 637
StyD4I	CCNGG	9 cut(s)	27, 59, 105, 414, 908, 1069, 1152, 1335, 1725
StyI	CCWWGG	2 cut(s)	632, 1888
TaaI	ACNGT	6 cut(s)	292, 398, 1110, 1167, 1480, 1934
TaiI	ACGT	1 cut(s)	1538
TaqI	TCGA	4 cut(s)	45, 93, 1386, 1789
TatI	WGTACW	5 cut(s)	303, 897, 1110, 1286, 1302
TauI	GCSGC	3 cut(s)	194, 197, 236
TfiI	GAWTC	3 cut(s)	551, 1616, 1833
Tru1I	TTAA	4 cut(s)	470, 837, 1221, 1506
Tru9I	TTAA	4 cut(s)	470, 837, 1221, 1506
TscAI	CASTG	5 cut(s)	403, 778, 1471, 1483, 1851
TseFI	GTSAC	4 cut(s)	151, 1389, 1462, 1474
TseI	GCWGC	2 cut(s)	179, 651
Tsp45I	GTSAC	4 cut(s)	151, 1389, 1462, 1474
TspRI	CASTG	5 cut(s)	403, 778, 1471, 1483, 1851
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	470
XapI	RAATTY	3 cut(s)	1097, 1749, 1840
XceI	RCATGY	5 cut(s)	511, 917, 1216, 1609, 1768
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	4 cut(s)	1308, 1454, 1878, 1960
ZraI	GACGTC	1 cut(s)	1536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.