RLG00000015777

L-tryptophan--pyruvate aminotransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001748
Physical Location & Seq
Reverse (-)
1377890 .. 1379317
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015777

Sequence Viewer

Length: 357 bp
ATGGTATCAGAGAGGACGACTGCGCCGGCCAAAGCACCGATCACTCCTCCCTCTCTGATCACCGCGACCCCAGCCGCTGCTTCGTCACCTTCGTCATCTCCACTGCTTGCAGCACCTTCATCTCTTCCCTCTGCTTCGCCCGCCGCAAACCAGGCCCAATCTCCTCTTGTCGCTCATCCACCGTCATCATATCCAGATGAGACAGACTATCTCCGTACAGGGCTTTACAGATGGGCAGGTGATGGATATGCCTTTGATAAGAAGGGAAATGGAGACTACATAGAGGTGGTGAATACTCCAAACAACCCAGATGGTACTAATCGGAAAGCCATGCATGGTGAAAAACAGACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
Alliinase_C

Protein Analysis

119

Amino Acids

12.32

Weight (kDa)

6.71

Isoelectric Point (pI)

67.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 46 - 112 4.4e-13 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 227
AccII CGCG 1 cut(s) 65
AciI CCGC 4 cut(s) 63, 75, 141, 144
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 2 cut(s) 217, 316
AjnI CCWGG 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 194, 267
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 2 cut(s) 27, 153
ApeKI GCWGC 2 cut(s) 77, 110
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 5 cut(s) 52, 78, 251, 301, 350
BbvI GCAGC 2 cut(s) 64, 122
BccI CCATC 3 cut(s) 225, 236, 305
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 194, 267
BfuAI ACCTGC 1 cut(s) 227
BisI GCNGC 4 cut(s) 75, 78, 111, 144
BlsI GCNGC 4 cut(s) 76, 79, 112, 145
Bme1390I CCNGG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 25
BseBI CCWGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 175
BseRI GAGGAG 2 cut(s) 36, 153
BseXI GCAGC 2 cut(s) 64, 122
BseYI CCCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 2 cut(s) 29, 155
BsiSI CCGG 1 cut(s) 26
BsmAI GTCTC 2 cut(s) 194, 267
BsnI GGCC 2 cut(s) 29, 155
Bsp143I GATC 2 cut(s) 39, 57
BspACI CCGC 4 cut(s) 63, 75, 141, 144
BspANI GGCC 2 cut(s) 29, 155
BspFNI CGCG 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssMI GATC 2 cut(s) 39, 57
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 27, 108, 141
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 2 cut(s) 42, 60
BstMAI GTCTC 2 cut(s) 194, 267
BstMBI GATC 2 cut(s) 39, 57
BstMWI GCNNNNNNNGC 3 cut(s) 71, 140, 152
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 64, 122
BsuRI GGCC 2 cut(s) 29, 155
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 101
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 27, 108, 141
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 216, 315
CviAII CATG 2 cut(s) 331, 335
CviJI RGCY 5 cut(s) 29, 74, 155, 223, 329
CviKI_1 RGCY 5 cut(s) 29, 74, 155, 223, 329
CviQI GTAC 2 cut(s) 216, 315
DpnI GATC 2 cut(s) 41, 59
DpnII GATC 2 cut(s) 39, 57
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 336
FaeI CATG 2 cut(s) 334, 338
FaiI YATR 5 cut(s) 190, 249, 281, 332, 336
FatI CATG 2 cut(s) 330, 334
FauI CCCGC 1 cut(s) 148
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 4 cut(s) 75, 78, 111, 144
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 4 cut(s) 75, 78, 111, 144
GlaI GCGC 1 cut(s) 24
GluI GCNGC 4 cut(s) 75, 78, 111, 144
GsaI CCCAGC 1 cut(s) 74
HaeIII GGCC 2 cut(s) 29, 155
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 334, 338
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HpaII CCGG 1 cut(s) 26
HphI GGTGA 5 cut(s) 52, 78, 251, 301, 350
Hpy188I TCNGA 3 cut(s) 10, 57, 324
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 3 cut(s) 99, 126, 256
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 110, 334
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 140, 152
Hsp92II CATG 2 cut(s) 334, 338
HspAI GCGC 1 cut(s) 23
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 2 cut(s) 39, 57
LpnPI CCDG 8 cut(s) 39, 84, 137, 164, 204, 207, 222, 321
Lsp1109I GCAGC 2 cut(s) 64, 122
MaeIII GTNAC 1 cut(s) 84
MalI GATC 2 cut(s) 41, 59
MboI GATC 2 cut(s) 39, 57
MboII GAAGA 1 cut(s) 116
MnlI CCTC 6 cut(s) 6, 57, 61, 139, 174, 277
Mph1103I ATGCAT 1 cut(s) 336
MroNI GCCGGC 1 cut(s) 25
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 3 cut(s) 71, 140, 152
NaeI GCCGGC 1 cut(s) 27
NdeII GATC 2 cut(s) 39, 57
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 2 cut(s) 334, 338
NmuCI GTSAC 1 cut(s) 84
NsiI ATGCAT 1 cut(s) 336
PaqCI CACCTGC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PdiI GCCGGC 1 cut(s) 27
PkrI GCNGC 4 cut(s) 76, 79, 112, 145
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 150
PspPI GGNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 77
RsaI GTAC 2 cut(s) 217, 316
RsaNI GTAC 2 cut(s) 216, 315
RseI CAYNNNNRTG 1 cut(s) 284
SatI GCNGC 4 cut(s) 75, 78, 111, 144
Sau3AI GATC 2 cut(s) 39, 57
Sau96I GGNCC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 152
SetI ASST 4 cut(s) 91, 118, 241, 288
SmiMI CAYNNNNRTG 1 cut(s) 284
SsiI CCGC 4 cut(s) 63, 75, 141, 144
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 183
TauI GCSGC 2 cut(s) 77, 146
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 2 cut(s) 77, 110
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.