Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002754.1

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

13287 .. 14355

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002754.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgaccgccaaccaccctgactatgcctgcttggcggcaaggattgttgtttcaaacctacacaagaacactaagaagtcattttcagagacggtcaaaattatgtacaaccatgtcaatgatagatctgggctagaagctcctctgattgctgatgatgtttatgaaatcatcatgaagaatgcggtgtgtttggacagtgagatcatttacgaccgagactttgactacgactactttggtttcaagactcttgagaggtcttacctcttaaaggttcatgggaagatggccgcaatggccaaccagcagcaacatgccttcatgtatcaacaacagcagatgatgatgatgggccaacaacaaccgcaatctttgaatccttttgggaatcctcatggagcacctgtgcacccctatggagcaggtatgcctgtccaagcatacaatccatacacgggccttttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

156

Amino Acids

17.74

Weight (kDa)

6.35

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	416
AciI	CCGC	5 cut(s)	6, 35, 185, 294, 368
AcoI	YGGCCR	2 cut(s)	291, 300
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	274, 458
AgsI	TTSAA	3 cut(s)	54, 247, 379
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw21I	GWGCWC	2 cut(s)	406, 414
Alw26I	GTCTC	2 cut(s)	83, 213
Alw44I	GTGCAC	1 cut(s)	410
AoxI	GGCC	4 cut(s)	291, 300, 355, 460
ApaLI	GTGCAC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	310
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspS9I	GGNCC	2 cut(s)	355, 460
BaeGI	GKGCMC	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	406, 414
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	2 cut(s)	283, 346
BcoDI	GTCTC	2 cut(s)	83, 213
BfaI	CTAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	416
BglI	GCCNNNNNGGC	2 cut(s)	32, 299
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	3 cut(s)	36, 294, 311
BlsI	GCNGC	3 cut(s)	37, 295, 312
BmgT120I	GGNCC	2 cut(s)	355, 460
BpuEI	CTTGAG	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 458
Bse3DI	GCAATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	274, 458
BseMI	GCAATG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	4 cut(s)	293, 302, 357, 462
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	406, 414
BslI	CCNNNNNNNGG	2 cut(s)	274, 458
BsmAI	GTCTC	2 cut(s)	83, 213
BsmBI	CGTCTC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	4 cut(s)	293, 302, 357, 462
Bsp1286I	GDGCHC	2 cut(s)	406, 414
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	125, 204
BspACI	CCGC	5 cut(s)	6, 35, 185, 294, 368
BspANI	GGCC	4 cut(s)	293, 302, 357, 462
BspHI	TCATGA	1 cut(s)	174
BspMI	ACCTGC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	303
BsrGI	TGTACA	1 cut(s)	105
BssMI	GATC	2 cut(s)	125, 204
Bst4CI	ACNGT	2 cut(s)	94, 200
BstAUI	TGTACA	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	72
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstKTI	GATC	2 cut(s)	128, 207
BstMAI	GTCTC	2 cut(s)	83, 213
BstMBI	GATC	2 cut(s)	125, 204
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 299
BstNSI	RCATGY	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	4 cut(s)	293, 302, 357, 462
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	355, 460
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	6 cut(s)	113, 175, 281, 317, 325, 398
CviJI	RGCY	6 cut(s)	133, 140, 293, 302, 357, 462
CviKI_1	RGCY	6 cut(s)	133, 140, 293, 302, 357, 462
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	127, 206
DpnII	GATC	2 cut(s)	125, 204
EaeI	YGGCCR	2 cut(s)	291, 300
EcoNI	CCTNNNNNAGG	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	6 cut(s)	116, 178, 284, 320, 328, 401
FatI	CATG	6 cut(s)	112, 174, 280, 316, 324, 397
Fnu4HI	GCNGC	3 cut(s)	36, 294, 311
Fsp4HI	GCNGC	3 cut(s)	36, 294, 311
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	3 cut(s)	36, 294, 311
HaeIII	GGCC	4 cut(s)	293, 302, 357, 462
Hin1II	CATG	6 cut(s)	116, 178, 284, 320, 328, 401
HinfI	GANTC	3 cut(s)	250, 379, 391
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	2 cut(s)	88, 147
Hpy188III	TCNNGA	3 cut(s)	175, 247, 254
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	94, 200
HpyCH4V	TGCA	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 299
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	6 cut(s)	116, 178, 284, 320, 328, 401
Kzo9I	GATC	2 cut(s)	125, 204
LmnI	GCTCC	3 cut(s)	145, 401, 422
LpnPI	CCDG	7 cut(s)	30, 40, 114, 320, 411, 420, 447
Lsp1109I	GCAGC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	134
MalI	GATC	2 cut(s)	127, 206
MboI	GATC	2 cut(s)	125, 204
MboII	GAAGA	2 cut(s)	190, 298
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	2 cut(s)	406, 414
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	4 cut(s)	153, 252, 278, 405
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	2 cut(s)	117, 417
Msp20I	TGGCCA	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	32, 299
NdeII	GATC	2 cut(s)	125, 204
NlaIII	CATG	6 cut(s)	116, 178, 284, 320, 328, 401
NspI	RCATGY	1 cut(s)	320
PagI	TCATGA	1 cut(s)	174
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	379, 391
PkrI	GCNGC	3 cut(s)	37, 295, 312
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	355, 460
PsuI	RGATCY	1 cut(s)	125
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	2 cut(s)	117, 417
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	3 cut(s)	36, 294, 311
Sau3AI	GATC	2 cut(s)	125, 204
Sau96I	GGNCC	2 cut(s)	355, 460
SchI	GAGTC	1 cut(s)	244
SduI	GDGCHC	2 cut(s)	406, 414
SetI	ASST	7 cut(s)	60, 142, 263, 270, 279, 409, 430
SfiI	GGCCNNNNNGGCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	2 cut(s)	117, 417
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	5 cut(s)	6, 35, 185, 294, 368
SspMI	CTAG	1 cut(s)	134
TaaI	ACNGT	2 cut(s)	94, 200
TaqII	GACCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	99
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	2 cut(s)	38, 296
TfiI	GAWTC	2 cut(s)	379, 391
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	4 cut(s)	180, 191, 269, 313
TspRI	CASTG	1 cut(s)	205
VneI	GTGCAC	1 cut(s)	410
XagI	CCTNNNNNAGG	1 cut(s)	272
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.