Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

14756177 .. 14756674

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTACAACCATGTGAATGATAGATCTGGGTTGGAAGCTCCTCTGATAGCTGATGATGTTTATGAAATCATCATGAAGATCATTTATGATGGGGACTTTGACTATGACTATTTTGGATTCAAGACTCTCGAGAGGTCTTACCTTTTAAAGGTTCATGGGAAGGTTGTAGAAAGGCCTCAGCATATGCTAATGAGGGTTGCTGCTGGAATACACAAGAATGATATTGATTCTTTTATCAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

81

Amino Acids

9.49

Weight (kDa)

5.7

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_lgN	PF00317	34 - 77	5e-12	Ribonucleotide reductase, all-alpha domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	2 cut(s)	38, 50
AluI	AGCT	2 cut(s)	38, 50
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	83
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	128
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	23, 78
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	3
BssMI	GATC	2 cut(s)	23, 78
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstKTI	GATC	2 cut(s)	26, 81
BstMBI	GATC	2 cut(s)	23, 78
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	11, 73, 155
CviJI	RGCY	3 cut(s)	38, 50, 175
CviKI_1	RGCY	3 cut(s)	38, 50, 175
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	2 cut(s)	25, 80
DpnII	GATC	2 cut(s)	23, 78
DraI	TTTAAA	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	146
FaeI	CATG	3 cut(s)	14, 76, 158
FaiI	YATR	8 cut(s)	12, 63, 74, 87, 105, 156, 183, 185
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	3 cut(s)	10, 72, 154
FauNDI	CATATG	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	14, 76, 158
HinfI	GANTC	3 cut(s)	117, 124, 227
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	4 cut(s)	73, 121, 128, 130
HpyAV	CCTTC	1 cut(s)	154
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	14, 76, 158
Kzo9I	GATC	2 cut(s)	23, 78
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	2 cut(s)	12, 189
Lsp1109I	GCAGC	1 cut(s)	187
MalI	GATC	2 cut(s)	25, 80
MboI	GATC	2 cut(s)	23, 78
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	1 cut(s)	23
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	4 cut(s)	51, 126, 186, 186
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	2 cut(s)	15, 216
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	2 cut(s)	23, 78
NlaIII	CATG	3 cut(s)	14, 76, 158
PaeR7I	CTCGAG	1 cut(s)	128
PagI	TCATGA	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	117, 227
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	15, 216
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	23, 78
SchI	GAGTC	1 cut(s)	118
SetI	ASST	6 cut(s)	40, 52, 137, 144, 153, 165
Sfr274I	CTCGAG	1 cut(s)	128
SgeI	CNNG	9 cut(s)	23, 39, 85, 133, 140, 142, 167, 216, 226
SlaI	CTCGAG	1 cut(s)	128
SmiMI	CAYNNNNRTG	2 cut(s)	15, 216
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	241
SseBI	AGGCCT	1 cut(s)	175
StuI	AGGCCT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	241
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	117, 227
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	78, 89, 143
XagI	CCTNNNNNAGG	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.