Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

1239996 .. 1241116

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG021200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTGTTTACGAAACCTCTCACCTGGCAAATGTGGGCGGTGACATGTGCCATCTTAGTCTACACAATCTTGGTAGTATAGATGATAGCATCGAAGTCATATATGATACCTTGAAGGAATGTGCTGTTATCAGCAAATCAGCTGGGGGAATTGGTGTCTCTGTTCACAACATTCGTGCCACTGGCAGTTATATTCATGGAACAAATGGGGCATCCAATGGCATCATTCCAATGCTGCGAGTTTTTTATGATACTGCCCGTTATGTTGATCAGGGGGGAGGCAAAAGGAAAGGTGCTTTTTCTGTGTACTTGGAGGCCTGGCATGCTGATATATTTGACTTTCTGGATCTAAGGAAAAATCATGCAAAGATATGTATCTCCTTTATCCCATGTATATCTGAAGAGAACAGAGCTCGTGATCTTTTTTATGCTCTTTGGGTGCCTGATCTGTTCATGAAAAGAGTTGAAAGTAATGGAGATTGGTCATTATTTTGTCCTAATGAGTCTCCAGACTGTAAAATTACCAACATAGAACAAGGGAAAGGCCGAAAAGGTTGTCCCGGCACAGTAACTGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

193

Amino Acids

21.22

Weight (kDa)

6.14

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_lgC	PF02867	25 - 170	1.4e-54	Ribonucleotide reductase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	61
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	354
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	115, 467
AjnI	CCWGG	2 cut(s)	24, 317
AluBI	AGCT	2 cut(s)	143, 413
AluI	AGCT	2 cut(s)	143, 413
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	2 cut(s)	163, 510
AlwI	GGATC	1 cut(s)	354
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	2 cut(s)	315, 544
ApeKI	GCWGC	1 cut(s)	235
ArsI	GACNNNNNNTTYG	2 cut(s)	541, 573
AsuC2I	CCSGG	1 cut(s)	561
AsuHPI	GGTGA	2 cut(s)	14, 53
BanI	GGYRCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	415
BauI	CACGAG	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	60
BciT130I	CCWGG	2 cut(s)	26, 319
BclI	TGATCA	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	163, 510
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	3 cut(s)	26, 319, 561
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	3 cut(s)	26, 319, 561
BmsI	GCATC	3 cut(s)	99, 221, 231
BpmI	CTGGAG	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	561
BsaBI	GATNNNNATC	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	187
Bse8I	GATNNNNATC	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	26, 319
BseGI	GGATG	1 cut(s)	212
BseJI	GATNNNNATC	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	143
BshFI	GGCC	2 cut(s)	317, 546
BshNI	GGYRCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	561
BslFI	GGGAC	1 cut(s)	543
BsmAI	GTCTC	2 cut(s)	163, 510
BsmFI	GGGAC	1 cut(s)	543
BsnI	GGCC	2 cut(s)	317, 546
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	4 cut(s)	268, 346, 418, 445
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	317, 546
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	4 cut(s)	268, 346, 418, 445
BssSI	CACGAG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	26, 319
Bst4CI	ACNGT	3 cut(s)	515, 568, 574
Bst6I	CTCTTC	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	56, 350
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	4 cut(s)	271, 349, 421, 448
BstMAI	GTCTC	2 cut(s)	163, 510
BstMBI	GATC	4 cut(s)	268, 346, 418, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	26, 319
BstNSI	RCATGY	2 cut(s)	49, 326
BstSCI	CCNGG	3 cut(s)	24, 317, 559
BstV1I	GCAGC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	317, 546
BtsCI	GGATG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	324
CaiI	CAGNNNCTG	1 cut(s)	572
CciI	TCATGA	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	6 cut(s)	46, 197, 323, 362, 390, 454
CviJI	RGCY	5 cut(s)	5, 143, 317, 413, 546
CviKI_1	RGCY	5 cut(s)	5, 143, 317, 413, 546
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	2 cut(s)	56, 350
DpnI	GATC	4 cut(s)	270, 348, 420, 447
DpnII	GATC	4 cut(s)	268, 346, 418, 445
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	413
Eco147I	AGGCCT	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	24, 317
EcoT38I	GRGCYC	1 cut(s)	415
FaeI	CATG	6 cut(s)	49, 200, 326, 365, 393, 457
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	6 cut(s)	45, 196, 322, 361, 389, 453
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	199
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	236
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	317, 546
HapII	CCGG	1 cut(s)	561
Hin1II	CATG	6 cut(s)	49, 200, 326, 365, 393, 457
HinfI	GANTC	1 cut(s)	503
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	2 cut(s)	14, 53
Hpy166II	GTNNAC	4 cut(s)	10, 62, 166, 307
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	4 cut(s)	344, 416, 454, 509
Hpy8I	GTNNAC	4 cut(s)	10, 62, 166, 307
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	3 cut(s)	515, 568, 574
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	56, 350
Hsp92II	CATG	6 cut(s)	49, 200, 326, 365, 393, 457
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	268, 346, 418, 445
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	3 cut(s)	99, 221, 231
MaeIII	GTNAC	2 cut(s)	41, 568
MalI	GATC	4 cut(s)	270, 348, 420, 447
MboI	GATC	4 cut(s)	268, 346, 418, 445
MboII	GAAGA	1 cut(s)	413
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	2 cut(s)	150, 519
MlyI	GAGTC	1 cut(s)	512
MnlI	CCTC	3 cut(s)	28, 272, 307
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	3 cut(s)	26, 319, 561
MvaI	CCWGG	2 cut(s)	26, 319
MwoI	GCNNNNNNNGC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	561
NdeII	GATC	4 cut(s)	268, 346, 418, 445
NlaIII	CATG	6 cut(s)	49, 200, 326, 365, 393, 457
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	2 cut(s)	49, 326
PaeI	GCATGC	1 cut(s)	326
PagI	TCATGA	1 cut(s)	453
PceI	AGGCCT	1 cut(s)	317
PciI	ACATGT	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PscI	ACATGT	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	415
Psp6I	CCWGG	2 cut(s)	24, 317
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	2 cut(s)	24, 317
PspN4I	GGNNCC	1 cut(s)	441
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	415
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	4 cut(s)	268, 346, 418, 445
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	3 cut(s)	26, 319, 561
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	7 cut(s)	20, 27, 113, 145, 295, 415, 556
SfaNI	GCATC	3 cut(s)	99, 221, 231
SmiMI	CAYNNNNRTG	1 cut(s)	230
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	2 cut(s)	150, 519
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	415
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	3 cut(s)	24, 317, 559
TaaI	ACNGT	3 cut(s)	515, 568, 574
TaqI	TCGA	1 cut(s)	93
TasI	AATT	2 cut(s)	150, 519
TatI	WGTACW	1 cut(s)	306
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	3 cut(s)	185, 442, 470
TspRI	CASTG	1 cut(s)	187
XceI	RCATGY	2 cut(s)	49, 326
XmiI	GTMKAC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.