Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032207.1

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 563

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032207.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 353 bp

actcatgcttctcccacccttttcaattctggaacgccaaggcctcaattgagtagctgcttccttgtttgcatgaaagatgatagcattgaaggcatatatgataccttgaaggaatgtgctgttatcagcaaatcagctgggggaattggtgtctctgttcacaacattcgtgccactggcagttacattcgtggaacaaatgggacgtccaatggcatcattccaatgctacgagtttttaatgatactgctcgttatgttgatcaggggggaggcaaaaggaaaggtgcttttgctgtgtacttggagccctggcatgctgatatatttgactttatggatctaaggaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

117

Amino Acids

12.7

Weight (kDa)

7.68

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	351
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	25, 92, 112
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	2 cut(s)	57, 140
AluI	AGCT	2 cut(s)	57, 140
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	351
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	57
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
BanII	GRGCYC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	316
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	38, 314
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	38, 314
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	265, 343
BspANI	GGCC	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	38, 314
BssMI	GATC	2 cut(s)	265, 343
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	316
BstACI	GRCGYC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	347
BstKTI	GATC	2 cut(s)	268, 346
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	265, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	3 cut(s)	5, 73, 320
CviJI	RGCY	4 cut(s)	43, 57, 140, 313
CviKI_1	RGCY	4 cut(s)	43, 57, 140, 313
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	2 cut(s)	267, 345
DpnII	GATC	2 cut(s)	265, 343
Eco130I	CCWWGG	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	3 cut(s)	8, 76, 323
FaiI	YATR	9 cut(s)	6, 74, 98, 100, 102, 261, 321, 329, 341
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	3 cut(s)	4, 72, 319
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	58
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	8, 76, 323
Hpy166II	GTNNAC	2 cut(s)	163, 304
Hpy188III	TCNNGA	1 cut(s)	30
Hpy8I	GTNNAC	2 cut(s)	163, 304
HpyAV	CCTTC	2 cut(s)	86, 106
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	3 cut(s)	8, 76, 323
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	265, 343
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	6 cut(s)	15, 126, 165, 254, 301, 328
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	228
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	267, 345
MboI	GATC	2 cut(s)	265, 343
MfeI	CAATTG	1 cut(s)	47
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	25, 47, 147
MnlI	CCTC	2 cut(s)	54, 269
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	316
MunI	CAATTG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeII	GATC	2 cut(s)	265, 343
NlaIII	CATG	3 cut(s)	8, 76, 323
NlaIV	GGNNCC	1 cut(s)	312
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	314
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	2 cut(s)	265, 343
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	5 cut(s)	59, 110, 142, 212, 292
SfaNI	GCATC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	3 cut(s)	25, 47, 147
SseBI	AGGCCT	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	38
TaiI	ACGT	1 cut(s)	212
TasI	AATT	3 cut(s)	25, 47, 147
TatI	WGTACW	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	184
XceI	RCATGY	1 cut(s)	323
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.