Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

1699546 .. 1700255

Gene Structure 710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG021500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCTGTTTACGAAACCTCTCACCTGGAAAATGTGGGCAGTGACATGTGCCATCTTAGTCTACACAATCTTGGTAGTATAGATGATAGCATCGAAGTCATATATGATACCTTGAAGGAATGTGCTGTTATCAGCAAATCAGCTGGGGGAATTGGTGTCTCTGTTCACAACATTCGTACCACTGGCAGTTATATTCATGGAACAAATGGGACATCCATTGGCATCAGTCCAATGCTGCGAGTTTTTATAATGATACTGCCCGTTATGTTGATCAGGGGGGAGGCAAAAGGAAAGGAAGAGAACAGAGCTCGTGATCTTTTTTATGCTCTTTGGGTGCCTGATCTGTTCATGAAAAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

120

Amino Acids

13.22

Weight (kDa)

6.17

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_lgC	PF02867	25 - 82	3e-15	Ribonucleotide reductase, barrel domain
Ribonuc_red_lgC	PF02867	88 - 120	2.6e-06	Ribonucleotide reductase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	2 cut(s)	143, 308
AluI	AGCT	2 cut(s)	143, 308
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	14
BaeI	ACNNNNGTAYC	2 cut(s)	160, 193
BanI	GGYRCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	26
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	99, 231
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	270, 313, 340
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	3 cut(s)	270, 313, 340
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	3 cut(s)	273, 316, 343
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	3 cut(s)	270, 313, 340
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	212
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	46, 180
CciI	TCATGA	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	3 cut(s)	46, 197, 349
CviJI	RGCY	3 cut(s)	5, 143, 308
CviKI_1	RGCY	3 cut(s)	5, 143, 308
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	3 cut(s)	272, 315, 342
DpnII	GATC	3 cut(s)	270, 313, 340
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	310
FaeI	CATG	3 cut(s)	49, 200, 352
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	3 cut(s)	45, 196, 348
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	199
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	236
GsaI	CCCAGC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	49, 200, 352
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	3 cut(s)	10, 62, 166
Hpy188III	TCNNGA	2 cut(s)	311, 349
Hpy8I	GTNNAC	3 cut(s)	10, 62, 166
HpyAV	CCTTC	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	49, 200, 352
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	270, 313, 340
LpnPI	CCDG	6 cut(s)	11, 38, 129, 168, 259, 351
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	2 cut(s)	99, 231
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	3 cut(s)	272, 315, 342
MboI	GATC	3 cut(s)	270, 313, 340
MboII	GAAGA	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	1 cut(s)	150
MnlI	CCTC	2 cut(s)	28, 274
MseI	TTAA	1 cut(s)	361
MspA1I	CMGCKG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
NdeII	GATC	3 cut(s)	270, 313, 340
NlaIII	CATG	3 cut(s)	49, 200, 352
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	49
PagI	TCATGA	1 cut(s)	348
PciI	ACATGT	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	237
PscI	ACATGT	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	3 cut(s)	270, 313, 340
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	5 cut(s)	20, 27, 113, 145, 310
SfaNI	GCATC	2 cut(s)	99, 231
Sse9I	AATT	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	24
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TscAI	CASTG	2 cut(s)	46, 187
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	185, 337
TspRI	CASTG	2 cut(s)	46, 187
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.