Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

10615787 .. 10621640

Gene Structure 5854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0079200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCAGTTGGCATGCCAACTAACAGAGTTATTGACGGCGTGTACCAAAATTCATATCGTGGGAGAGTACATGTTCCTGTCCATGGACTGATTCAAGAGATAGTGACTACCAGAAAGCTATCCAAGTCGGAGCACTTTGAAACAGATGAAAAGGTAAAAACAATCAGCTTATTTGAGGAAATATGCGGTGTAGGTCCAGCTACTGCACTAAAATTATTTGAAAAAGGACATCGTACATTAGATGATTTGAAGAATGAAGATTTATTGACACATTCACAGAAGTTGGGGTTAAGATATTATGAGGATATCAAACAGAGGATCCCACGACATGAGGTCAACTCGCTCAAGAGATGGAACTTCTTCTATAAAAAGCAGCAGAGGATGTTTTGCCTGGGTCCAGACATTGGTGACATTATTGGCCTTGAATTAAAAGGAGATAATGCACTTATTGCTGCTGATATTGAGCGTTCTTCACTTGTTTTATGTGGCAATGCATTCTCAGATTCAAATGCAACTAAAGAAGCACTAGTTGTCTTGTCCGGATCTGTTATATTTGCCCGAAGAGGCCTTCCCCTATCTGCAAGGCTTTTAGTGTTTGGTGATTATATGCTTCTTTTATGTGCACCAGAAGATACCATTAAGGGTTGTGGAGATTTGTTGGTGCCAGGAGATGTAGGAGTTATTCGTTCTTCTGAAGGTGTTGCCCCATTGTTTCAAACTGGAAGCTCTGGTAGCTCAAATCTATTCAAGTTGCCAGCTGCTGCAGTCCTTGCAACTGTTGATAGTGATTTTGCTTACAACTATCTTGGGAGATGGGGCAAATTGGTTTGTCAACTGAGATTACTTTTCACAAGAGTTAAGATACCAATTGCTGTTGTTCTTCGTGGTATTGAGACAACAGATAGTATAGTAGTCGCTGTTGTAGTAAACTTTATCAAACGACAGTTTTCTGGTATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

320

Amino Acids

35.3

Weight (kDa)

8.81

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_lambd_f	PF10391	57 - 103	4.6e-18	Fingers domain of DNA polymerase lambda

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	661
AccB7I	CCANNNNNTGG	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	539
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	3 cut(s)	313, 326, 550
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	3 cut(s)	44, 69, 235
AfiI	CCNNNNNNNGG	2 cut(s)	83, 404
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	8 cut(s)	95, 140, 221, 250, 425, 507, 716, 748
AhdI	GACNNNNNGTC	1 cut(s)	332
AhlI	ACTAGT	1 cut(s)	526
AjnI	CCWGG	2 cut(s)	390, 664
AluBI	AGCT	6 cut(s)	118, 168, 200, 726, 735, 758
AluI	AGCT	6 cut(s)	118, 168, 200, 726, 735, 758
Alw21I	GWGCWC	2 cut(s)	135, 625
Alw26I	GTCTC	1 cut(s)	887
Alw44I	GTGCAC	1 cut(s)	621
AlwI	GGATC	3 cut(s)	313, 326, 550
AlwNI	CAGNNNCTG	2 cut(s)	203, 761
Aor13HI	TCCGGA	1 cut(s)	539
AoxI	GGCC	2 cut(s)	418, 565
ApaLI	GTGCAC	1 cut(s)	621
ApeKI	GCWGC	4 cut(s)	373, 452, 758, 761
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	194, 395
AsuHPI	GGTGA	2 cut(s)	419, 611
AvaII	GGWCC	2 cut(s)	194, 395
BaeGI	GKGCMC	1 cut(s)	625
BamHI	GGATCC	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	661
Bbv12I	GWGCWC	2 cut(s)	135, 625
BbvI	GCAGC	4 cut(s)	385, 439, 745, 748
BccI	CCATC	2 cut(s)	345, 807
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	2 cut(s)	392, 666
BcoDI	GTCTC	1 cut(s)	887
BcuI	ACTAGT	1 cut(s)	526
BfaI	CTAG	1 cut(s)	527
BfmI	CTRYAG	1 cut(s)	762
BisI	GCNGC	4 cut(s)	374, 453, 759, 762
BlsI	GCNGC	4 cut(s)	375, 454, 760, 763
Bme1390I	CCNGG	2 cut(s)	392, 666
Bme18I	GGWCC	2 cut(s)	194, 395
BmeRI	GACNNNNNGTC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	194, 395
BmiI	GGNNCC	3 cut(s)	320, 396, 663
BmrFI	CCNGG	2 cut(s)	392, 666
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuEI	CTTGAG	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	82, 391
BsaWI	WCCGGW	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 404
Bse1I	ACTGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	496
BseAI	TCCGGA	1 cut(s)	539
BseBI	CCWGG	2 cut(s)	392, 666
BseDI	CCNNGG	2 cut(s)	82, 391
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	83, 404
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	2 cut(s)	513, 827
BseNI	ACTGG	1 cut(s)	724
BseSI	GKGCMC	1 cut(s)	625
BseXI	GCAGC	4 cut(s)	385, 439, 745, 748
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	420, 567
BshNI	GGYRCC	1 cut(s)	661
BsiHKAI	GWGCWC	2 cut(s)	135, 625
BsiSI	CCGG	1 cut(s)	540
BslI	CCNNNNNNNGG	2 cut(s)	83, 404
BsmAI	GTCTC	1 cut(s)	887
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	2 cut(s)	420, 567
Bsp1286I	GDGCHC	2 cut(s)	135, 625
Bsp13I	TCCGGA	1 cut(s)	539
Bsp143I	GATC	2 cut(s)	318, 542
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	420, 567
BspCNI	CTCAG	2 cut(s)	512, 828
BspEI	TCCGGA	1 cut(s)	539
BspLI	GGNNCC	3 cut(s)	320, 396, 663
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	3 cut(s)	313, 326, 550
BspT107I	GGYRCC	1 cut(s)	661
BsrDI	GCAATG	1 cut(s)	496
BsrI	ACTGG	1 cut(s)	724
BssECI	CCNNGG	2 cut(s)	82, 391
BssMI	GATC	2 cut(s)	318, 542
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	2 cut(s)	392, 666
Bst4CI	ACNGT	2 cut(s)	778, 945
Bst6I	CTCTTC	1 cut(s)	556
BstAPI	GCANNNNNTGC	2 cut(s)	449, 770
BstC8I	GCNNGC	2 cut(s)	14, 756
BstDEI	CTNAG	2 cut(s)	499, 836
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	2 cut(s)	321, 545
BstMAI	GTCTC	1 cut(s)	887
BstMBI	GATC	2 cut(s)	318, 542
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 732, 770
BstNI	CCWGG	2 cut(s)	392, 666
BstNSI	RCATGY	2 cut(s)	16, 74
BstSCI	CCNGG	2 cut(s)	390, 664
BstSFI	CTRYAG	1 cut(s)	762
BstSLI	GKGCMC	1 cut(s)	625
BstV1I	GCAGC	4 cut(s)	385, 439, 745, 748
BstX2I	RGATCY	2 cut(s)	318, 542
BstYI	RGATCY	2 cut(s)	318, 542
BsuRI	GGCC	2 cut(s)	420, 567
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	387
Cac8I	GCNNGC	2 cut(s)	14, 756
CaiI	CAGNNNCTG	2 cut(s)	203, 761
Cfr13I	GGNCC	2 cut(s)	194, 395
Csp6I	GTAC	3 cut(s)	43, 68, 234
CviAII	CATG	4 cut(s)	13, 71, 83, 329
CviJI	RGCY	9 cut(s)	118, 168, 200, 420, 567, 586, 726, 735, 758
CviKI_1	RGCY	9 cut(s)	118, 168, 200, 420, 567, 586, 726, 735, 758
CviQI	GTAC	3 cut(s)	43, 68, 234
DdeI	CTNAG	2 cut(s)	499, 836
DpnI	GATC	2 cut(s)	320, 544
DpnII	GATC	2 cut(s)	318, 542
DriI	GACNNNNNGTC	1 cut(s)	332
Eam1104I	CTCTTC	1 cut(s)	556
Eam1105I	GACNNNNNGTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	556
Eco130I	CCWWGG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	194, 395
Eco57I	CTGAAG	1 cut(s)	714
EcoRII	CCWGG	2 cut(s)	390, 664
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	4 cut(s)	16, 74, 86, 332
FatI	CATG	4 cut(s)	12, 70, 82, 328
Fnu4HI	GCNGC	4 cut(s)	374, 453, 759, 762
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	4 cut(s)	374, 453, 759, 762
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	4 cut(s)	374, 453, 759, 762
HaeIII	GGCC	2 cut(s)	420, 567
HapII	CCGG	1 cut(s)	540
Hin1II	CATG	4 cut(s)	16, 74, 86, 332
HincII	GTYRAC	2 cut(s)	337, 833
HindII	GTYRAC	2 cut(s)	337, 833
HinfI	GANTC	2 cut(s)	91, 503
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	2 cut(s)	419, 611
Hpy166II	GTNNAC	5 cut(s)	43, 337, 623, 833, 928
Hpy188I	TCNGA	4 cut(s)	130, 502, 694, 962
Hpy188III	TCNNGA	4 cut(s)	95, 346, 398, 540
Hpy8I	GTNNAC	5 cut(s)	43, 337, 623, 833, 928
HpyAV	CCTTC	2 cut(s)	578, 689
HpyCH4III	ACNGT	2 cut(s)	778, 945
HpyCH4V	TGCA	8 cut(s)	206, 443, 494, 512, 581, 623, 764, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 732, 770
HpyF3I	CTNAG	2 cut(s)	499, 836
Hsp92II	CATG	4 cut(s)	16, 74, 86, 332
Kpn2I	TCCGGA	1 cut(s)	539
Kzo9I	GATC	2 cut(s)	318, 542
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	4 cut(s)	385, 439, 745, 748
MaeI	CTAG	1 cut(s)	527
MaeIII	GTNAC	2 cut(s)	103, 407
MalI	GATC	2 cut(s)	320, 544
MboI	GATC	2 cut(s)	318, 542
MboII	GAAGA	8 cut(s)	262, 269, 352, 462, 573, 641, 681, 872
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	2 cut(s)	318, 542
MhlI	GDGCHC	2 cut(s)	135, 625
MluCI	AATT	5 cut(s)	49, 212, 425, 821, 867
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	6 cut(s)	169, 295, 309, 325, 372, 557
Mph1103I	ATGCAT	1 cut(s)	496
MroI	TCCGGA	1 cut(s)	539
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	4 cut(s)	290, 428, 639, 858
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	2 cut(s)	392, 666
MunI	CAATTG	1 cut(s)	867
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	2 cut(s)	392, 666
MwoI	GCNNNNNNNGC	3 cut(s)	449, 732, 770
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	2 cut(s)	318, 542
NlaIII	CATG	4 cut(s)	16, 74, 86, 332
NlaIV	GGNNCC	3 cut(s)	320, 396, 663
NmuCI	GTSAC	2 cut(s)	103, 407
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	2 cut(s)	16, 74
PaeI	GCATGC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	567
PciI	ACATGT	1 cut(s)	70
PctI	GAATGC	1 cut(s)	494
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	91, 503
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	4 cut(s)	375, 454, 760, 763
PscI	ACATGT	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	390, 664
PspGI	CCWGG	2 cut(s)	390, 664
PspN4I	GGNNCC	3 cut(s)	320, 396, 663
PspPI	GGNCC	2 cut(s)	194, 395
PstI	CTGCAG	1 cut(s)	766
PstNI	CAGNNNCTG	2 cut(s)	203, 761
PsuI	RGATCY	2 cut(s)	318, 542
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	3 cut(s)	44, 69, 235
RsaNI	GTAC	3 cut(s)	43, 68, 234
SaqAI	TTAA	4 cut(s)	290, 428, 639, 858
SatI	GCNGC	4 cut(s)	374, 453, 759, 762
Sau3AI	GATC	2 cut(s)	318, 542
Sau96I	GGNCC	2 cut(s)	194, 395
ScrFI	CCNGG	2 cut(s)	392, 666
SduI	GDGCHC	2 cut(s)	135, 625
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	2 cut(s)	194, 395
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SpeI	ACTAGT	1 cut(s)	526
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	5 cut(s)	49, 212, 425, 821, 867
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	527
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	390, 664
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	778, 945
TasI	AATT	5 cut(s)	49, 212, 425, 821, 867
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	91, 503
Tru1I	TTAA	4 cut(s)	290, 428, 639, 858
Tru9I	TTAA	4 cut(s)	290, 428, 639, 858
TseFI	GTSAC	2 cut(s)	103, 407
TseI	GCWGC	4 cut(s)	373, 452, 758, 761
Tsp45I	GTSAC	2 cut(s)	103, 407
TspDTI	ATGAA	3 cut(s)	42, 162, 270
Van91I	CCANNNNNTGG	1 cut(s)	404
VneI	GTGCAC	1 cut(s)	621
VpaK11BI	GGWCC	2 cut(s)	194, 395
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	2 cut(s)	16, 74
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	527
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.