Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000073.1

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

41077 .. 42037

Gene Structure 961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000073.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgggcttagcatcgagcattgcgacccggttttggtggcccagaaggtctgcgctggaggtctataagggcgtcaccactaggcagcttgatgaattggctgctgagaccgccgctgctatgactaccaaccaccctgactatgcctgcttggcggcaaggattgttatttcaaacctacacaagaacactaagaagtccttttcagagacggtcaaaattatgtacaaccatgtcaatgatagatctgggctagaagatcctctgattgctgatgatgtttatgaaatcatcatgaagaatgcggtgtgtttggacagtgagatcatttacgaccgagactttgactacgactactttggtttcaagactcttgagaggtcttacctcttaaaggttcatgggaaggttgtagaaaggcctcagcacatgctaatgagggttgctgttggaatacacaagaatgatattgattctgtaacaaccaattcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

164

Amino Acids

18.72

Weight (kDa)

6.29

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	111, 114, 155, 305
AclWI	GGATC	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	33, 394
AgsI	TTSAA	2 cut(s)	174, 367
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	3 cut(s)	101, 203, 333
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	2 cut(s)	38, 419
ApeKI	GCWGC	3 cut(s)	85, 101, 116
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	67
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	88, 97, 103
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	3 cut(s)	101, 203, 333
BfaI	CTAG	2 cut(s)	81, 254
BglI	GCCNNNNNGGC	1 cut(s)	152
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	5 cut(s)	86, 102, 114, 117, 156
BlpI	GCTNAGC	1 cut(s)	7
BlsI	GCNGC	5 cut(s)	87, 103, 115, 118, 157
Bme1390I	CCNGG	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	423
Bpu1102I	GCTNAGC	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 394
Bse3DI	GCAATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	33, 394
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	96, 437
BseXI	GCAGC	3 cut(s)	88, 97, 103
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	2 cut(s)	40, 421
BsiEI	CGRYCG	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	33, 394
BsmAI	GTCTC	3 cut(s)	101, 203, 333
BsmBI	CGTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	40, 421
Bso31I	GGTCTC	1 cut(s)	101
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	245, 259, 324
Bsp1720I	GCTNAGC	1 cut(s)	7
BspACI	CCGC	4 cut(s)	111, 114, 155, 305
BspANI	GGCC	2 cut(s)	40, 421
BspCNI	CTCAG	2 cut(s)	97, 436
BspHI	TCATGA	2 cut(s)	294, 491
BspPI	GGATC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	225
BssMI	GATC	3 cut(s)	245, 259, 324
BssNI	GRCGYC	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	214, 320
BstACI	GRCGYC	1 cut(s)	72
BstAUI	TGTACA	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	4 cut(s)	7, 105, 192, 423
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	3 cut(s)	248, 262, 327
BstMAI	GTCTC	3 cut(s)	101, 203, 333
BstMBI	GATC	3 cut(s)	245, 259, 324
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 152
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	88, 97, 103
BstX2I	RGATCY	2 cut(s)	245, 259
BstYI	RGATCY	2 cut(s)	245, 259
BsuRI	GGCC	2 cut(s)	40, 421
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	148
CciI	TCATGA	2 cut(s)	294, 491
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	5 cut(s)	233, 295, 401, 430, 492
CviJI	RGCY	6 cut(s)	6, 40, 88, 101, 253, 421
CviKI_1	RGCY	6 cut(s)	6, 40, 88, 101, 253, 421
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	4 cut(s)	7, 105, 192, 423
DpnI	GATC	3 cut(s)	247, 261, 326
DpnII	GATC	3 cut(s)	245, 259, 324
Eco147I	AGGCCT	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	101
EcoNI	CCTNNNNNAGG	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	5 cut(s)	236, 298, 404, 433, 495
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	5 cut(s)	232, 294, 400, 429, 491
Fnu4HI	GCNGC	5 cut(s)	86, 102, 114, 117, 156
Fsp4HI	GCNGC	5 cut(s)	86, 102, 114, 117, 156
FspBI	CTAG	2 cut(s)	81, 254
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	5 cut(s)	86, 102, 114, 117, 156
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	40, 421
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	5 cut(s)	236, 298, 404, 433, 495
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	2 cut(s)	370, 473
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	208, 267
Hpy188III	TCNNGA	4 cut(s)	295, 367, 374, 492
HpyAV	CCTTC	2 cut(s)	39, 400
HpyCH4III	ACNGT	2 cut(s)	214, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 152
HpyF3I	CTNAG	4 cut(s)	7, 105, 192, 423
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	236, 298, 404, 433, 495
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	3 cut(s)	245, 259, 324
LpnPI	CCDG	6 cut(s)	41, 41, 55, 150, 160, 234
Lsp1109I	GCAGC	3 cut(s)	88, 97, 103
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	2 cut(s)	81, 254
MaeIII	GTNAC	2 cut(s)	73, 478
MalI	GATC	3 cut(s)	247, 261, 326
MboI	GATC	3 cut(s)	245, 259, 324
MboII	GAAGA	2 cut(s)	269, 310
MflI	RGATCY	2 cut(s)	245, 259
MluCI	AATT	3 cut(s)	95, 219, 487
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	6 cut(s)	52, 273, 372, 398, 432, 432
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	3 cut(s)	237, 434, 462
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	2 cut(s)	110, 152
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	3 cut(s)	245, 259, 324
NlaIII	CATG	5 cut(s)	236, 298, 404, 433, 495
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	433
PagI	TCATGA	2 cut(s)	294, 491
PceI	AGGCCT	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	5 cut(s)	87, 103, 115, 118, 157
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	2 cut(s)	245, 259
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	3 cut(s)	237, 434, 462
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	5 cut(s)	86, 102, 114, 117, 156
Sau3AI	GATC	3 cut(s)	245, 259, 324
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	8 cut(s)	50, 63, 90, 180, 383, 390, 399, 411
SfaNI	GCATC	1 cut(s)	20
SmiMI	CAYNNNNRTG	3 cut(s)	237, 434, 462
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	95, 219, 487
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	4 cut(s)	111, 114, 155, 305
SspMI	CTAG	2 cut(s)	81, 254
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	214, 320
TaqI	TCGA	1 cut(s)	14
TaqII	GACCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	95, 219, 487
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	2 cut(s)	116, 158
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	85, 101, 116
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	5 cut(s)	108, 300, 311, 389, 480
TspRI	CASTG	1 cut(s)	325
XagI	CCTNNNNNAGG	1 cut(s)	392
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	2 cut(s)	81, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.