Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Forward (+)

44941044 .. 44946192

Gene Structure 5149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG337900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTATGTGGTGAAGAGAGACGGGAGCCAGGAGGCGGTCCATTTCGACAAGATTACGGCCCGGTTGAAGAAGCTCAGCTATGGGCTTAGCATAGAGCATTGCGACCCGGTTTTGGTGGCCCAGAAGGTCTGCGCCGGAGTCTACAAGGGCGTCACCACTAGCCAGCTTGATGAATTGGCTGCTGAGACCGCCGCCGCTATGACCGCCAACCACCCTGACTATGCCTGCTTGGCGGCAAGGATTGTTGTTTCAAACCTACACAAGAACACTAAGAAGTCCTTTTCAGAGACGGTCAAAATTATGTACAACCATGTCAATGATAGATCTGGGCTAGAAGCTCCTCTGATTGCTGATGATGTTTATGAAATCATCATGAAGAATGTGGTGTGTTTGGACAGTGAGATCATTTACGACCGAGACTTTGACTACGACTACTTTGGTTTCAAGACTCTTGAGAGGTCTTACCTCTTAAAGGTTCATGGGAAGATATGCTGTTGTGGTGATCAAGCAATAAAAAAGGTTTCTTTAACAAGGCCATCTACCAAAGCAAGGTTAGCTAACATTGATGGCGTCGACAACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

194

Amino Acids

21.63

Weight (kDa)

6.99

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-cone	PF03477	1 - 88	8.6e-15	ATP cone domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	141, 573
AciI	CCGC	6 cut(s)	35, 189, 192, 195, 204, 233
AcyI	GRCGYC	2 cut(s)	150, 570
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	4 cut(s)	34, 112, 472, 549
AgsI	TTSAA	3 cut(s)	67, 252, 445
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	5 cut(s)	73, 78, 166, 338, 557
AluI	AGCT	5 cut(s)	73, 78, 166, 338, 557
Alw26I	GTCTC	4 cut(s)	12, 179, 281, 411
AoxI	GGCC	3 cut(s)	57, 117, 533
ApeKI	GCWGC	1 cut(s)	179
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	3 cut(s)	37, 58, 118
AsuC2I	CCSGG	2 cut(s)	61, 107
AsuHPI	GGTGA	3 cut(s)	22, 145, 512
AvaII	GGWCC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	544, 560
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	29
BclI	TGATCA	1 cut(s)	502
BcnI	CCSGG	2 cut(s)	61, 107
BcoDI	GTCTC	4 cut(s)	12, 179, 281, 411
BfaI	CTAG	2 cut(s)	159, 332
BglI	GCCNNNNNGGC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	4 cut(s)	180, 192, 195, 234
BlpI	GCTNAGC	2 cut(s)	74, 86
BlsI	GCNGC	4 cut(s)	181, 193, 196, 235
Bme1390I	CCNGG	3 cut(s)	29, 61, 107
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	3 cut(s)	37, 58, 118
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	3 cut(s)	29, 61, 107
Bpu1102I	GCTNAGC	2 cut(s)	74, 86
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	2 cut(s)	61, 107
BsaHI	GRCGYC	2 cut(s)	150, 570
BsaI	GGTCTC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 112, 472, 549
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	4 cut(s)	34, 112, 472, 549
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	2 cut(s)	88, 174
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	166
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	3 cut(s)	59, 119, 535
BsiEI	CGRYCG	1 cut(s)	415
BsiSI	CCGG	3 cut(s)	61, 107, 135
BslI	CCNNNNNNNGG	4 cut(s)	34, 112, 472, 549
BsmAI	GTCTC	4 cut(s)	12, 179, 281, 411
BsmBI	CGTCTC	2 cut(s)	12, 281
BsnI	GGCC	3 cut(s)	59, 119, 535
Bso31I	GGTCTC	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	323, 402, 502
Bsp1720I	GCTNAGC	2 cut(s)	74, 86
BspACI	CCGC	6 cut(s)	35, 189, 192, 195, 204, 233
BspANI	GGCC	3 cut(s)	59, 119, 535
BspCNI	CTCAG	2 cut(s)	87, 175
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	580
BssMI	GATC	3 cut(s)	323, 402, 502
BssNI	GRCGYC	2 cut(s)	150, 570
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	292, 398
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	150, 570
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	164, 226
BstDEI	CTNAG	4 cut(s)	74, 86, 183, 270
BstENI	CCTNNNNNAGG	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	326, 405, 505
BstMAI	GTCTC	4 cut(s)	12, 179, 281, 411
BstMBI	GATC	3 cut(s)	323, 402, 502
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 203, 230, 554
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	3 cut(s)	27, 59, 105
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BsuRI	GGCC	3 cut(s)	59, 119, 535
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	164, 226
CciI	TCATGA	1 cut(s)	372
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	3 cut(s)	37, 58, 118
CseI	GACGC	2 cut(s)	139, 559
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	3 cut(s)	311, 373, 479
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	4 cut(s)	74, 86, 183, 270
DpnI	GATC	3 cut(s)	325, 404, 504
DpnII	GATC	3 cut(s)	323, 402, 502
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	27
Esp3I	CGTCTC	2 cut(s)	12, 281
FaeI	CATG	3 cut(s)	314, 376, 482
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	3 cut(s)	310, 372, 478
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	2 cut(s)	141, 573
Fnu4HI	GCNGC	4 cut(s)	180, 192, 195, 234
Fsp4HI	GCNGC	4 cut(s)	180, 192, 195, 234
FspBI	CTAG	2 cut(s)	159, 332
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	4 cut(s)	180, 192, 195, 234
HaeIII	GGCC	3 cut(s)	59, 119, 535
HapII	CCGG	3 cut(s)	61, 107, 135
HgaI	GACGC	2 cut(s)	139, 559
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	2 cut(s)	150, 570
Hin1II	CATG	3 cut(s)	314, 376, 482
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	2 cut(s)	138, 448
HpaII	CCGG	3 cut(s)	61, 107, 135
HphI	GGTGA	3 cut(s)	22, 145, 512
Hpy166II	GTNNAC	2 cut(s)	142, 574
Hpy188I	TCNGA	2 cut(s)	286, 345
Hpy188III	TCNNGA	3 cut(s)	373, 445, 452
Hpy8I	GTNNAC	2 cut(s)	142, 574
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	2 cut(s)	292, 398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 203, 230, 554
HpyF3I	CTNAG	4 cut(s)	74, 86, 183, 270
Hsp92I	GRCGYC	2 cut(s)	150, 570
Hsp92II	CATG	3 cut(s)	314, 376, 482
HspAI	GCGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	323, 402, 502
LmnI	GCTCC	2 cut(s)	24, 343
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	2 cut(s)	159, 332
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	3 cut(s)	325, 404, 504
MboI	GATC	3 cut(s)	323, 402, 502
MboII	GAAGA	4 cut(s)	25, 79, 388, 496
MflI	RGATCY	1 cut(s)	323
MluCI	AATT	2 cut(s)	173, 297
MlyI	GAGTC	2 cut(s)	147, 442
MnlI	CCTC	4 cut(s)	25, 351, 450, 476
MseI	TTAA	2 cut(s)	470, 527
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	3 cut(s)	61, 107, 135
MspR9I	CCNGG	3 cut(s)	29, 61, 107
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	188, 203, 230, 554
NciI	CCSGG	2 cut(s)	61, 107
NdeII	GATC	3 cut(s)	323, 402, 502
NlaIII	CATG	3 cut(s)	314, 376, 482
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	372
PkrI	GCNGC	4 cut(s)	181, 193, 196, 235
PleI	GAGTC	2 cut(s)	146, 442
PpsI	GAGTC	2 cut(s)	146, 442
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	3 cut(s)	37, 58, 118
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	315
SalI	GTCGAC	1 cut(s)	572
SaqAI	TTAA	2 cut(s)	470, 527
SatI	GCNGC	4 cut(s)	180, 192, 195, 234
Sau3AI	GATC	3 cut(s)	323, 402, 502
Sau96I	GGNCC	3 cut(s)	37, 58, 118
SchI	GAGTC	2 cut(s)	147, 442
ScrFI	CCNGG	3 cut(s)	29, 61, 107
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	173, 297
SsiI	CCGC	6 cut(s)	35, 189, 192, 195, 204, 233
SspMI	CTAG	2 cut(s)	159, 332
StyD4I	CCNGG	3 cut(s)	27, 59, 105
TaaI	ACNGT	2 cut(s)	292, 398
TaqI	TCGA	2 cut(s)	45, 573
TaqII	GACCGA	1 cut(s)	429
TasI	AATT	2 cut(s)	173, 297
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	3 cut(s)	194, 197, 236
Tru1I	TTAA	2 cut(s)	470, 527
Tru9I	TTAA	2 cut(s)	470, 527
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	186, 378, 389, 467
TspRI	CASTG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	470
XmiI	GTMKAC	2 cut(s)	141, 573
XspI	CTAG	2 cut(s)	159, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.