Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

74869124 .. 74872375

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG469900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTATGTGATGAAGAGAGACGGGCGCCAGGAGGAGAAGGTCTGCGCCGGAGTCTACAAGGGCGTCACCACTAGCCATCTTGATGAATTGGCTGCTGAGACCGCCGCCGCTATGACCGCCAACCACCCTGACTATGCCTGCTTGGCGGCAAGGATTGTTGTTTCAAACCTACACAAGAACACTAAGAAGTCCTTTTCAGAGACGGTCAAAATTATGTACAACCATGTCAATGATAGATCTGGGCTAGAAGCTCCTCTGCTTGCTGATGATGTTTATGAAATCATCATGAAGGACAGTGATTGGAAGAAGAATTCAGTGTTCAGCACAAGCACCACCTCCAGCTTGGCTAGGAAGTGCTTTTCCGGAGCCGGGCCAGAGGACTTGAGATGGTCCAAAAGCCTAACATTGGACATTGTTGCAGAGAACCCGAAAAAATTCAGAGTAGTGGCCCTAGTAGCTGGCTCAAATGTGTATCTTCTTGTTGATCAGATGTTGCTTCATCTTGTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

170

Amino Acids

18.84

Weight (kDa)

7.72

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	362
AciI	CCGC	5 cut(s)	102, 105, 108, 117, 146
AcsI	RAATTY	2 cut(s)	310, 434
AcyI	GRCGYC	2 cut(s)	25, 63
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	369, 406
AgsI	TTSAA	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	3 cut(s)	251, 342, 458
AluI	AGCT	3 cut(s)	251, 342, 458
Alw26I	GTCTC	3 cut(s)	12, 92, 194
Aor13HI	TCCGGA	1 cut(s)	362
AoxI	GGCC	2 cut(s)	371, 447
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	2 cut(s)	310, 434
Asp700I	GAANNNNTTC	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	27, 47
AspS9I	GGNCC	3 cut(s)	371, 390, 448
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	84, 381
BciT130I	CCWGG	1 cut(s)	29
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	12, 92, 194
BfaI	CTAG	4 cut(s)	72, 245, 348, 452
BfoI	RGCGCY	1 cut(s)	28
BglI	GCCNNNNNGGC	1 cut(s)	143
BglII	AGATCT	1 cut(s)	236
BisI	GCNGC	4 cut(s)	93, 105, 108, 147
BlsI	GCNGC	4 cut(s)	94, 106, 109, 148
Bme1390I	CCNGG	2 cut(s)	29, 370
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	3 cut(s)	371, 390, 448
BmiI	GGNNCC	2 cut(s)	26, 367
BmrFI	CCNGG	2 cut(s)	29, 370
BpmI	CTGGAG	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	1 cut(s)	370
BsaHI	GRCGYC	2 cut(s)	25, 63
BsaI	GGTCTC	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 406
BseAI	TCCGGA	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	369, 406
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	2 cut(s)	47, 243
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	2 cut(s)	373, 449
BshNI	GGYRCC	1 cut(s)	24
BsiSI	CCGG	3 cut(s)	48, 363, 369
BslI	CCNNNNNNNGG	2 cut(s)	369, 406
BsmAI	GTCTC	3 cut(s)	12, 92, 194
BsmBI	CGTCTC	2 cut(s)	12, 194
BsnI	GGCC	2 cut(s)	373, 449
Bso31I	GGTCTC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	362
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	236, 484
BspACI	CCGC	5 cut(s)	102, 105, 108, 117, 146
BspANI	GGCC	2 cut(s)	373, 449
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	362
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	26, 367
BspT107I	GGYRCC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	216
BssMI	GATC	2 cut(s)	236, 484
BssNI	GRCGYC	2 cut(s)	25, 63
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	205, 296
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	25, 63
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	139, 261, 460
BstDEI	CTNAG	2 cut(s)	96, 183
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	27, 47
BstKTI	GATC	2 cut(s)	239, 487
BstMAI	GTCTC	3 cut(s)	12, 92, 194
BstMBI	GATC	2 cut(s)	236, 484
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 116, 143, 455
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	27, 368
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	373, 449
BtsIMutI	CAGTG	2 cut(s)	301, 321
Cac8I	GCNNGC	3 cut(s)	139, 261, 460
CciI	TCATGA	1 cut(s)	285
CfoI	GCGC	2 cut(s)	27, 47
Cfr13I	GGNCC	3 cut(s)	371, 390, 448
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	224, 286
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	96, 183
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	2 cut(s)	238, 486
DpnII	GATC	2 cut(s)	236, 484
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	27
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
Esp3I	CGTCTC	2 cut(s)	12, 194
FaeI	CATG	2 cut(s)	227, 289
FaiI	YATR	7 cut(s)	6, 113, 135, 215, 225, 276, 287
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FatI	CATG	2 cut(s)	223, 285
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	93, 105, 108, 147
Fsp4HI	GCNGC	4 cut(s)	93, 105, 108, 147
FspBI	CTAG	4 cut(s)	72, 245, 348, 452
GlaI	GCGC	2 cut(s)	26, 46
GluI	GCNGC	4 cut(s)	93, 105, 108, 147
GsuI	CTGGAG	1 cut(s)	322
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	2 cut(s)	373, 449
HapII	CCGG	3 cut(s)	48, 363, 369
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	27, 47
Hin1I	GRCGYC	2 cut(s)	25, 63
Hin1II	CATG	2 cut(s)	227, 289
Hin6I	GCGC	2 cut(s)	25, 45
HinP1I	GCGC	2 cut(s)	25, 45
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	3 cut(s)	48, 363, 369
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	199, 440, 489
Hpy188III	TCNNGA	3 cut(s)	80, 286, 363
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	31, 283
HpyCH4III	ACNGT	2 cut(s)	205, 296
HpyCH4V	TGCA	2 cut(s)	419, 508
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 116, 143, 455
HpyF3I	CTNAG	2 cut(s)	96, 183
Hsp92I	GRCGYC	2 cut(s)	25, 63
Hsp92II	CATG	2 cut(s)	227, 289
HspAI	GCGC	2 cut(s)	25, 45
KasI	GGCGCC	1 cut(s)	24
Kpn2I	TCCGGA	1 cut(s)	362
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	236, 484
LmnI	GCTCC	2 cut(s)	256, 365
Lsp1109I	GCAGC	1 cut(s)	79
MaeI	CTAG	4 cut(s)	72, 245, 348, 452
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	238, 486
MboI	GATC	2 cut(s)	236, 484
MboII	GAAGA	4 cut(s)	25, 316, 319, 467
MflI	RGATCY	1 cut(s)	236
MluCI	AATT	4 cut(s)	86, 210, 310, 434
Mly113I	GGCGCC	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	4 cut(s)	25, 264, 346, 370
MroI	TCCGGA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	434
MslI	CAYNNNNRTG	2 cut(s)	81, 228
MspI	CCGG	3 cut(s)	48, 363, 369
MspR9I	CCNGG	2 cut(s)	29, 370
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	101, 116, 143, 455
NarI	GGCGCC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	2 cut(s)	236, 484
NlaIII	CATG	2 cut(s)	227, 289
NlaIV	GGNNCC	2 cut(s)	26, 367
NmuCI	GTSAC	1 cut(s)	64
PagI	TCATGA	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	434
PkrI	GCNGC	4 cut(s)	94, 106, 109, 148
PleI	GAGTC	1 cut(s)	59
PluTI	GGCGCC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	26, 367
PspPI	GGNCC	3 cut(s)	371, 390, 448
PsuI	RGATCY	1 cut(s)	236
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	81, 228
SatI	GCNGC	4 cut(s)	93, 105, 108, 147
Sau3AI	GATC	2 cut(s)	236, 484
Sau96I	GGNCC	3 cut(s)	371, 390, 448
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	29, 370
SetI	ASST	6 cut(s)	42, 171, 253, 338, 344, 460
SfoI	GGCGCC	1 cut(s)	26
SinI	GGWCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	2 cut(s)	81, 228
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	4 cut(s)	86, 210, 310, 434
SsiI	CCGC	5 cut(s)	102, 105, 108, 117, 146
SspDI	GGCGCC	1 cut(s)	24
SspMI	CTAG	4 cut(s)	72, 245, 348, 452
StyD4I	CCNGG	2 cut(s)	27, 368
TaaI	ACNGT	2 cut(s)	205, 296
TasI	AATT	4 cut(s)	86, 210, 310, 434
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	3 cut(s)	107, 110, 149
TscAI	CASTG	2 cut(s)	301, 321
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	5 cut(s)	26, 99, 291, 302, 488
TspRI	CASTG	2 cut(s)	301, 321
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	2 cut(s)	310, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	4 cut(s)	72, 245, 348, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.