Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007442.1

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Forward (+)

4987 .. 6323

Gene Structure 1337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007442.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgtatgtggtgaagagagacgggcgccaggaggcggtccatttcgacaagattacggcccggttgaagaagctcagctatgggcttagcatcgagcattgcgacccgattttggtggcccagaaggtctgctccggagtctacaagggcgtcaccactagccagcttgatgcattggctgctgagaccgccgccgctataaccgccaaccaccctgactatgcctgcttggcggcaaggattgttgtttcaaacctacacaagaacactaagaagtccttttcagagacggtcaaaattatgtacaaccatgtcaatgatagatctgggctagaagctcctccgattgctgatgatgtttatgaaatcatcatgaagaatgcggtgtgtttggacagtgagatcaattacgaccgagactttgactacgactactttggtttcaagactcttgagaggtcttacctcttaaaggttcatgggaaggttgtagaaaggcctcagcacatgctaatgagggttgctattggaatacacaagaatgatattgattctgtaacaaccaattcattatcccttttatgcatccaacacagtggccgcaccaccctctgtacagatggccgcaatggccaaccagcaacaacatgccttcatgtatcaacaacagcagatgatgatgatgggccaacaacaaccgcaatctttgaatccttttgggaatcctcatggagcacctgtgcgcccctatggagcaggtatgcctgtccaagcatacaatccattcacgggccttttgtagatgggtatgtccaaggaaacacacacttattcatatacgggaaagaaaggaacatgagaaaagtcggttttagaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

293

Amino Acids

32.71

Weight (kDa)

6.85

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	747
AccB1I	GGYRCC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	141
AccIII	TCCGGA	1 cut(s)	134
AcoI	YGGCCR	3 cut(s)	598, 622, 631
AcyI	GRCGYC	2 cut(s)	25, 150
AfaI	GTAC	2 cut(s)	305, 616
AfiI	CCNNNNNNNGG	4 cut(s)	34, 112, 472, 789
AgsI	TTSAA	4 cut(s)	67, 252, 445, 710
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	4 cut(s)	73, 78, 166, 338
AluI	AGCT	4 cut(s)	73, 78, 166, 338
Alw21I	GWGCWC	1 cut(s)	737
Alw26I	GTCTC	4 cut(s)	12, 179, 281, 411
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	8 cut(s)	57, 117, 497, 598, 622, 631, 686, 791
ApeKI	GCWGC	1 cut(s)	179
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspLEI	GCGC	2 cut(s)	27, 745
AspS9I	GGNCC	5 cut(s)	37, 58, 118, 686, 791
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	22, 145
AvaII	GGWCC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	737
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	3 cut(s)	614, 677, 797
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	4 cut(s)	12, 179, 281, 411
BfaI	CTAG	2 cut(s)	159, 332
BfoI	RGCGCY	1 cut(s)	28
BfuAI	ACCTGC	1 cut(s)	747
BglI	GCCNNNNNGGC	2 cut(s)	230, 630
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	6 cut(s)	180, 192, 195, 234, 601, 625
BlpI	GCTNAGC	2 cut(s)	74, 86
BlsI	GCNGC	6 cut(s)	181, 193, 196, 235, 602, 626
Bme1390I	CCNGG	2 cut(s)	29, 61
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	5 cut(s)	37, 58, 118, 686, 791
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	29, 61
BmsI	GCATC	3 cut(s)	99, 160, 594
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu1102I	GCTNAGC	2 cut(s)	74, 86
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	2 cut(s)	25, 150
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	814
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	724, 754
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 112, 472, 789
Bse3DI	GCAATG	2 cut(s)	97, 634
BseAI	TCCGGA	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	814
BseGI	GGATG	1 cut(s)	585
BseLI	CCNNNNNNNGG	4 cut(s)	34, 112, 472, 789
BseMI	GCAATG	2 cut(s)	97, 634
BseMII	CTCAG	3 cut(s)	88, 174, 515
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	166
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	8 cut(s)	59, 119, 499, 600, 624, 633, 688, 793
BshNI	GGYRCC	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	737
BsiSI	CCGG	2 cut(s)	61, 135
BslI	CCNNNNNNNGG	4 cut(s)	34, 112, 472, 789
BsmAI	GTCTC	4 cut(s)	12, 179, 281, 411
BsmBI	CGTCTC	2 cut(s)	12, 281
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	8 cut(s)	59, 119, 499, 600, 624, 633, 688, 793
Bso31I	GGTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	737
Bsp13I	TCCGGA	1 cut(s)	134
Bsp1407I	TGTACA	2 cut(s)	303, 614
Bsp143I	GATC	2 cut(s)	323, 402
Bsp1720I	GCTNAGC	2 cut(s)	74, 86
BspANI	GGCC	8 cut(s)	59, 119, 499, 600, 624, 633, 688, 793
BspCNI	CTCAG	3 cut(s)	87, 175, 514
BspEI	TCCGGA	1 cut(s)	134
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	747
BspT107I	GGYRCC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	2 cut(s)	97, 634
BsrGI	TGTACA	2 cut(s)	303, 614
BssECI	CCNNGG	1 cut(s)	814
BssMI	GATC	2 cut(s)	323, 402
BssNI	GRCGYC	2 cut(s)	25, 150
BssT1I	CCWWGG	1 cut(s)	814
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	292, 398, 596
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	25, 150
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstAUI	TGTACA	2 cut(s)	303, 614
BstC8I	GCNNGC	2 cut(s)	164, 226
BstDEI	CTNAG	5 cut(s)	74, 86, 183, 270, 501
BstENI	CCTNNNNNAGG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	585
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	27, 745
BstKTI	GATC	2 cut(s)	326, 405
BstMAI	GTCTC	4 cut(s)	12, 179, 281, 411
BstMBI	GATC	2 cut(s)	323, 402
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 188, 203, 230, 630
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	2 cut(s)	511, 651
BstSCI	CCNGG	2 cut(s)	27, 59
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	323
BstXI	CCANNNNNNTGG	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	323
BsuRI	GGCC	8 cut(s)	59, 119, 499, 600, 624, 633, 688, 793
BtsCI	GGATG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	403, 601
BveI	ACCTGC	1 cut(s)	747
Cac8I	GCNNGC	2 cut(s)	164, 226
CciI	TCATGA	1 cut(s)	372
CfoI	GCGC	2 cut(s)	27, 745
Cfr13I	GGNCC	5 cut(s)	37, 58, 118, 686, 791
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	304, 615
CviAII	CATG	8 cut(s)	311, 373, 479, 508, 648, 656, 729, 856
CviQI	GTAC	2 cut(s)	304, 615
DdeI	CTNAG	5 cut(s)	74, 86, 183, 270, 501
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	2 cut(s)	325, 404
DpnII	GATC	2 cut(s)	323, 402
EaeI	YGGCCR	3 cut(s)	598, 622, 631
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	814
Eco147I	AGGCCT	1 cut(s)	499
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	814
EcoT22I	ATGCAT	2 cut(s)	175, 587
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	814
Esp3I	CGTCTC	2 cut(s)	12, 281
FaeI	CATG	8 cut(s)	314, 376, 482, 511, 651, 659, 732, 859
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	8 cut(s)	310, 372, 478, 507, 647, 655, 728, 855
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	6 cut(s)	180, 192, 195, 234, 601, 625
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	6 cut(s)	180, 192, 195, 234, 601, 625
FspBI	CTAG	2 cut(s)	159, 332
GlaI	GCGC	2 cut(s)	26, 744
GluI	GCNGC	6 cut(s)	180, 192, 195, 234, 601, 625
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	8 cut(s)	59, 119, 499, 600, 624, 633, 688, 793
HapII	CCGG	2 cut(s)	61, 135
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	2 cut(s)	27, 745
Hin1I	GRCGYC	2 cut(s)	25, 150
Hin1II	CATG	8 cut(s)	314, 376, 482, 511, 651, 659, 732, 859
Hin6I	GCGC	2 cut(s)	25, 743
HinP1I	GCGC	2 cut(s)	25, 743
HinfI	GANTC	5 cut(s)	138, 448, 551, 710, 722
HpaII	CCGG	2 cut(s)	61, 135
HphI	GGTGA	2 cut(s)	22, 145
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	286, 345
Hpy188III	TCNNGA	4 cut(s)	135, 373, 445, 452
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	3 cut(s)	118, 478, 662
HpyCH4III	ACNGT	3 cut(s)	292, 398, 596
HpyCH4V	TGCA	2 cut(s)	173, 585
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 188, 203, 230, 630
HpyF3I	CTNAG	5 cut(s)	74, 86, 183, 270, 501
Hsp92I	GRCGYC	2 cut(s)	25, 150
Hsp92II	CATG	8 cut(s)	314, 376, 482, 511, 651, 659, 732, 859
HspAI	GCGC	2 cut(s)	25, 743
KasI	GGCGCC	1 cut(s)	24
Kpn2I	TCCGGA	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	323, 402
LmnI	GCTCC	4 cut(s)	137, 343, 732, 753
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	3 cut(s)	99, 160, 594
MaeI	CTAG	2 cut(s)	159, 332
MaeIII	GTNAC	2 cut(s)	151, 556
MalI	GATC	2 cut(s)	325, 404
MboI	GATC	2 cut(s)	323, 402
MboII	GAAGA	3 cut(s)	25, 79, 388
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	737
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	3 cut(s)	297, 406, 565
MluNI	TGGCCA	1 cut(s)	633
Mly113I	GGCGCC	1 cut(s)	25
MlyI	GAGTC	2 cut(s)	147, 442
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	9 cut(s)	25, 351, 450, 476, 510, 510, 620, 736, 869
Mox20I	TGGCCA	1 cut(s)	633
Mph1103I	ATGCAT	2 cut(s)	175, 587
MroI	TCCGGA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	2 cut(s)	470, 880
MslI	CAYNNNNRTG	3 cut(s)	315, 512, 540
Msp20I	TGGCCA	1 cut(s)	633
MspI	CCGG	2 cut(s)	61, 135
MspR9I	CCNGG	2 cut(s)	29, 61
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	5 cut(s)	179, 188, 203, 230, 630
NarI	GGCGCC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	323, 402
NlaIII	CATG	8 cut(s)	314, 376, 482, 511, 651, 659, 732, 859
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	151
NsiI	ATGCAT	2 cut(s)	175, 587
NspI	RCATGY	2 cut(s)	511, 651
PagI	TCATGA	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	551, 710, 722
PkrI	GCNGC	6 cut(s)	181, 193, 196, 235, 602, 626
PleI	GAGTC	2 cut(s)	146, 442
PluTI	GGCGCC	1 cut(s)	28
PpsI	GAGTC	2 cut(s)	146, 442
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	5 cut(s)	37, 58, 118, 686, 791
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	2 cut(s)	305, 616
RsaNI	GTAC	2 cut(s)	304, 615
RseI	CAYNNNNRTG	3 cut(s)	315, 512, 540
SaqAI	TTAA	2 cut(s)	470, 880
SatI	GCNGC	6 cut(s)	180, 192, 195, 234, 601, 625
Sau3AI	GATC	2 cut(s)	323, 402
Sau96I	GGNCC	5 cut(s)	37, 58, 118, 686, 791
SchI	GAGTC	2 cut(s)	147, 442
ScrFI	CCNGG	2 cut(s)	29, 61
SduI	GDGCHC	1 cut(s)	737
SfaNI	GCATC	3 cut(s)	99, 160, 594
SfiI	GGCCNNNNNGGCC	1 cut(s)	630
SfoI	GGCGCC	1 cut(s)	26
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	3 cut(s)	315, 512, 540
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	297, 406, 565
SseBI	AGGCCT	1 cut(s)	499
SspDI	GGCGCC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	159, 332
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	2 cut(s)	27, 59
StyI	CCWWGG	1 cut(s)	814
TaaI	ACNGT	3 cut(s)	292, 398, 596
TaqI	TCGA	2 cut(s)	45, 93
TaqII	GACCGA	1 cut(s)	429
TasI	AATT	3 cut(s)	297, 406, 565
TatI	WGTACW	2 cut(s)	303, 614
TauI	GCSGC	5 cut(s)	194, 197, 236, 603, 627
TfiI	GAWTC	3 cut(s)	551, 710, 722
Tru1I	TTAA	2 cut(s)	470, 880
Tru9I	TTAA	2 cut(s)	470, 880
TscAI	CASTG	2 cut(s)	403, 601
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	6 cut(s)	378, 389, 467, 558, 644, 823
TspRI	CASTG	2 cut(s)	403, 601
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	470
XceI	RCATGY	2 cut(s)	511, 651
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	159, 332
Zsp2I	ATGCAT	2 cut(s)	175, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.