Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Forward (+)

1634519 .. 1634788

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG020400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCTCTCTTATGTGTTCAATCTGGCATTGGCTTTTTCCTGCTTTAATTTGCTTTGGGGTTTAGGCTTTTCTTCCCGACTTTGCTTGCTTCAATTGCAGTCATATCCAGATGAGACCGACTATCTCCGTACAGGGCTTTACGGATGGGCAGGTGATGGATATGCCTTTGATAAGAAGGGAAATGGAGATTACATAGAGGTAGTGAACGCTCCAAACAACCCACATGGTACTAATCGGAAAGCCATGCATGGTGAAAAACAGACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

Alliinase_C

Protein Analysis

89

Amino Acids

10.03

Weight (kDa)

6.7

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alliinase_C	PF04864	34 - 83	3.1e-10	Allinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	130, 229
AgsI	TTSAA	2 cut(s)	19, 92
Alw26I	GTCTC	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	164, 263
BccI	CCATC	2 cut(s)	138, 149
BcoDI	GTCTC	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	107
BseGI	GGATG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	107
BspMI	ACCTGC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	149
BstMAI	GTCTC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	129, 228
CviAII	CATG	3 cut(s)	224, 244, 248
CviJI	RGCY	4 cut(s)	32, 66, 136, 242
CviKI_1	RGCY	4 cut(s)	32, 66, 136, 242
CviQI	GTAC	2 cut(s)	129, 228
Eco31I	GGTCTC	1 cut(s)	107
EcoT22I	ATGCAT	1 cut(s)	249
FaeI	CATG	3 cut(s)	227, 247, 251
FaiI	YATR	7 cut(s)	12, 103, 162, 194, 225, 245, 249
FatI	CATG	3 cut(s)	223, 243, 247
FokI	GGATG	1 cut(s)	156
Hin1II	CATG	3 cut(s)	227, 247, 251
HphI	GGTGA	2 cut(s)	164, 263
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	2 cut(s)	75, 107
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	97, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	227, 247, 251
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	5 cut(s)	8, 52, 117, 120, 135
MboII	GAAGA	1 cut(s)	63
MfeI	CAATTG	1 cut(s)	92
MluCI	AATT	2 cut(s)	46, 92
MnlI	CCTC	1 cut(s)	190
Mph1103I	ATGCAT	1 cut(s)	249
MseI	TTAA	1 cut(s)	45
MunI	CAATTG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	94
NlaIII	CATG	3 cut(s)	227, 247, 251
NsiI	ATGCAT	1 cut(s)	249
PaqCI	CACCTGC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	130, 229
RsaNI	GTAC	2 cut(s)	129, 228
SaqAI	TTAA	1 cut(s)	45
SetI	ASST	2 cut(s)	154, 201
Sse9I	AATT	2 cut(s)	46, 92
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	2 cut(s)	46, 92
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TspGWI	ACGGA	2 cut(s)	116, 156
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.