Rh2BG020700

L-tryptophan--pyruvate aminotransferase 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
1442009 .. 1443109
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG020700.1

Sequence Viewer

Length: 435 bp
ATGAAGACTTCGAAGATTTTGTACCGCAATCATAAGCAGTTTCTCCGCCACATTAAAAGAAACGTACCCGTTAATGACGCAGCTGATGATGACCAGCTTAACAACAATTACCAGAATGAAATGGAGAATCGAAGAGAGGAACACCGCCATCTAGATGAAGTCAGCCACGCTCTAGTAGAAAAAATCCGCAAACTGATCAAAGAAGTAATCTACCATGCGGACCCTCTAGCAGAAGAAGAACACCGCCAACTGATGAACGAATCATCATATCCAGATGAGACAGACTATCTCCGTACAGGGCTTTACAGATGGGCAGGTGATGGATATGCCTTTGATAAGAAGGGAAATGGAGACTACATAGAGGCGGTGAACACTCCAAACAACCCAGATGGTACTAATCGGAAAGCCATGCATGGTGAAAAACAGACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

17.02

Weight (kDa)

6.24

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 88 - 138 4.8e-11 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 305
AciI CCGC 7 cut(s) 25, 46, 145, 187, 218, 244, 365
AfaI GTAC 4 cut(s) 23, 66, 295, 394
AluBI AGCT 2 cut(s) 83, 97
AluI AGCT 2 cut(s) 83, 97
Alw26I GTCTC 2 cut(s) 272, 345
ApeKI GCWGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 3 cut(s) 329, 379, 428
AsuII TTCGAA 1 cut(s) 11
AvaII GGWCC 1 cut(s) 220
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 92
BccI CCATC 4 cut(s) 156, 303, 314, 383
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 2 cut(s) 272, 345
BfaI CTAG 3 cut(s) 152, 173, 227
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 11
BseXI GCAGC 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 272, 345
Bsp119I TTCGAA 1 cut(s) 11
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 7 cut(s) 25, 46, 145, 187, 218, 244, 365
BspLI GGNNCC 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 305
BspT104I TTCGAA 1 cut(s) 11
BssMI GATC 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 127
BstBI TTCGAA 1 cut(s) 11
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 2 cut(s) 272, 345
BstMBI GATC 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 11
BveI ACCTGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 86
Csp6I GTAC 4 cut(s) 22, 65, 294, 393
CviAII CATG 3 cut(s) 215, 409, 413
CviJI RGCY 5 cut(s) 83, 97, 165, 301, 407
CviKI_1 RGCY 5 cut(s) 83, 97, 165, 301, 407
CviQI GTAC 4 cut(s) 22, 65, 294, 393
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 414
FaeI CATG 3 cut(s) 218, 412, 416
FaiI YATR 7 cut(s) 33, 216, 268, 327, 359, 410, 414
FatI CATG 3 cut(s) 214, 408, 412
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 3 cut(s) 152, 173, 227
GluI GCNGC 1 cut(s) 81
HgaI GACGC 1 cut(s) 86
Hin1II CATG 3 cut(s) 218, 412, 416
HinfI GANTC 2 cut(s) 127, 260
HphI GGTGA 3 cut(s) 329, 379, 428
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 2 cut(s) 152, 272
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 412
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 3 cut(s) 218, 412, 416
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 1 cut(s) 195
LpnPI CCDG 6 cut(s) 107, 125, 282, 285, 300, 399
Lsp1109I GCAGC 1 cut(s) 92
MaeI CTAG 3 cut(s) 152, 173, 227
MaeII ACGT 1 cut(s) 63
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 5 cut(s) 16, 25, 144, 245, 248
MluCI AATT 1 cut(s) 106
MnlI CCTC 3 cut(s) 130, 234, 355
Mph1103I ATGCAT 1 cut(s) 414
MseI TTAA 3 cut(s) 54, 72, 99
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 83
NdeII GATC 1 cut(s) 195
NlaIII CATG 3 cut(s) 218, 412, 416
NlaIV GGNNCC 1 cut(s) 222
NsiI ATGCAT 1 cut(s) 414
NspV TTCGAA 1 cut(s) 11
PaqCI CACCTGC 1 cut(s) 305
PfeI GAWTC 2 cut(s) 127, 260
PkrI GCNGC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 4 cut(s) 23, 66, 295, 394
RsaNI GTAC 4 cut(s) 22, 65, 294, 393
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 3 cut(s) 54, 72, 99
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 220
SetI ASST 4 cut(s) 66, 85, 99, 319
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 1 cut(s) 106
SsiI CCGC 7 cut(s) 25, 46, 145, 187, 218, 244, 365
SspMI CTAG 3 cut(s) 152, 173, 227
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 11, 130
TasI AATT 1 cut(s) 106
TfiI GAWTC 2 cut(s) 127, 260
Tru1I TTAA 3 cut(s) 54, 72, 99
Tru9I TTAA 3 cut(s) 54, 72, 99
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 17, 132, 171, 269
TspGWI ACGGA 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 220
XbaI TCTAGA 1 cut(s) 151
XspI CTAG 3 cut(s) 152, 173, 227
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.