Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

16359737 .. 16361109

Gene Structure 1373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG111200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTATGTGGTGAAGAGAGACGGGCGCCAGGAGGCGATCCATTTCGACAAGATTACGGCCCGGTTGAAGAAGCTCAGCTATGGGCTTAGCATCGAGCATTGCGACCCGGTTTTGGTGGCCCAGAAGGTCTGCGCCGGAGTCTACAAGGGCGTCACCACTAGCCAGCTTGATGAATTGGCTGCTGAGACTACCGCCGCTATGACCGCCAACCACCCTGACTATGCCTGCTTGGCAACAAGGATTGTTGTTTCAAACCTACACAAGAACACTAAGAAGTCCTTTTCAGAGATGGTCAAAATTATGTACAACCATGTCAATGATAGATCTGGGCTAGAAGCTCCTCTGATTGCTAATGATGTTTATGAAATCATCATGAAGAATGCGGTGTGTTTGGACAATGAGATCATTTACGACCGAGACTTTGACTACGACTACTTTGGTTTCAAGACTCTTGAGAGGTCTTACCTCTTAAAGGTTCATGGGAAGGTTGTAGAAAGGCCTCAGCACATGCTAATGAGGGTTGCTGTTGGAATACACAAGAATGATATTGATTCTGTAACAACCAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

190

Amino Acids

21.53

Weight (kDa)

7.08

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-cone	PF03477	1 - 88	2.2e-13	ATP cone domain
Ribonuc_red_lgN	PF00317	142 - 182	8.1e-11	Ribonucleotide reductase, all-alpha domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	4 cut(s)	192, 195, 204, 383
AclWI	GGATC	1 cut(s)	31
AcyI	GRCGYC	2 cut(s)	25, 150
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	112, 472
AgsI	TTSAA	3 cut(s)	67, 252, 445
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	4 cut(s)	73, 78, 166, 338
AluI	AGCT	4 cut(s)	73, 78, 166, 338
Alw26I	GTCTC	3 cut(s)	12, 179, 411
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	3 cut(s)	57, 117, 497
ApeKI	GCWGC	1 cut(s)	179
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspLEI	GCGC	2 cut(s)	27, 134
AspS9I	GGNCC	2 cut(s)	58, 118
AsuC2I	CCSGG	2 cut(s)	61, 107
AsuHPI	GGTGA	2 cut(s)	22, 145
BanI	GGYRCC	1 cut(s)	24
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	29
BcnI	CCSGG	2 cut(s)	61, 107
BcoDI	GTCTC	3 cut(s)	12, 179, 411
BfaI	CTAG	2 cut(s)	159, 332
BfoI	RGCGCY	1 cut(s)	28
BglI	GCCNNNNNGGC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	2 cut(s)	180, 195
BlpI	GCTNAGC	2 cut(s)	74, 86
BlsI	GCNGC	2 cut(s)	181, 196
Bme1390I	CCNGG	3 cut(s)	29, 61, 107
BmgT120I	GGNCC	2 cut(s)	58, 118
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	3 cut(s)	29, 61, 107
BmsI	GCATC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu1102I	GCTNAGC	2 cut(s)	74, 86
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	2 cut(s)	61, 107
BsaHI	GRCGYC	2 cut(s)	25, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 472
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	112, 472
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	3 cut(s)	88, 174, 515
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	166
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	3 cut(s)	59, 119, 499
BshNI	GGYRCC	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	415
BsiSI	CCGG	3 cut(s)	61, 107, 135
BslI	CCNNNNNNNGG	2 cut(s)	112, 472
BsmAI	GTCTC	3 cut(s)	12, 179, 411
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	59, 119, 499
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	36, 323, 402
Bsp1720I	GCTNAGC	2 cut(s)	74, 86
BspACI	CCGC	4 cut(s)	192, 195, 204, 383
BspANI	GGCC	3 cut(s)	59, 119, 499
BspCNI	CTCAG	3 cut(s)	87, 175, 514
BspHI	TCATGA	2 cut(s)	372, 569
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	303
BssMI	GATC	3 cut(s)	36, 323, 402
BssNI	GRCGYC	2 cut(s)	25, 150
Bst2UI	CCWGG	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	25, 150
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	164, 226
BstDEI	CTNAG	5 cut(s)	74, 86, 183, 270, 501
BstENI	CCTNNNNNAGG	1 cut(s)	470
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	27, 134
BstKTI	GATC	3 cut(s)	39, 326, 405
BstMAI	GTCTC	3 cut(s)	12, 179, 411
BstMBI	GATC	3 cut(s)	36, 323, 402
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 230
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	3 cut(s)	27, 59, 105
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BsuRI	GGCC	3 cut(s)	59, 119, 499
Cac8I	GCNNGC	2 cut(s)	164, 226
CciI	TCATGA	2 cut(s)	372, 569
CfoI	GCGC	2 cut(s)	27, 134
Cfr13I	GGNCC	2 cut(s)	58, 118
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	5 cut(s)	311, 373, 479, 508, 570
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	5 cut(s)	74, 86, 183, 270, 501
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	3 cut(s)	38, 325, 404
DpnII	GATC	3 cut(s)	36, 323, 402
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco147I	AGGCCT	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	27
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	5 cut(s)	314, 376, 482, 511, 573
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	5 cut(s)	310, 372, 478, 507, 569
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	180, 195
Fsp4HI	GCNGC	2 cut(s)	180, 195
FspBI	CTAG	2 cut(s)	159, 332
GlaI	GCGC	2 cut(s)	26, 133
GluI	GCNGC	2 cut(s)	180, 195
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	3 cut(s)	59, 119, 499
HapII	CCGG	3 cut(s)	61, 107, 135
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	2 cut(s)	27, 134
Hin1I	GRCGYC	2 cut(s)	25, 150
Hin1II	CATG	5 cut(s)	314, 376, 482, 511, 573
Hin6I	GCGC	2 cut(s)	25, 132
HinP1I	GCGC	2 cut(s)	25, 132
HinfI	GANTC	3 cut(s)	138, 448, 551
HpaII	CCGG	3 cut(s)	61, 107, 135
HphI	GGTGA	2 cut(s)	22, 145
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	286, 345
Hpy188III	TCNNGA	4 cut(s)	373, 445, 452, 570
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	118, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 230
HpyF3I	CTNAG	5 cut(s)	74, 86, 183, 270, 501
Hsp92I	GRCGYC	2 cut(s)	25, 150
Hsp92II	CATG	5 cut(s)	314, 376, 482, 511, 573
HspAI	GCGC	2 cut(s)	25, 132
KasI	GGCGCC	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	36, 323, 402
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	2 cut(s)	159, 332
MaeIII	GTNAC	2 cut(s)	151, 556
MalI	GATC	3 cut(s)	38, 325, 404
MboI	GATC	3 cut(s)	36, 323, 402
MboII	GAAGA	3 cut(s)	25, 79, 388
MflI	RGATCY	1 cut(s)	323
MluCI	AATT	3 cut(s)	173, 297, 565
Mly113I	GGCGCC	1 cut(s)	25
MlyI	GAGTC	2 cut(s)	147, 442
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	6 cut(s)	25, 351, 450, 476, 510, 510
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	3 cut(s)	315, 512, 540
MspI	CCGG	3 cut(s)	61, 107, 135
MspR9I	CCNGG	3 cut(s)	29, 61, 107
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	203, 230
NarI	GGCGCC	1 cut(s)	25
NciI	CCSGG	2 cut(s)	61, 107
NdeII	GATC	3 cut(s)	36, 323, 402
NlaIII	CATG	5 cut(s)	314, 376, 482, 511, 573
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	511
PagI	TCATGA	2 cut(s)	372, 569
PceI	AGGCCT	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	2 cut(s)	181, 196
PleI	GAGTC	2 cut(s)	146, 442
PluTI	GGCGCC	1 cut(s)	28
PpsI	GAGTC	2 cut(s)	146, 442
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	58, 118
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	3 cut(s)	315, 512, 540
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	2 cut(s)	180, 195
Sau3AI	GATC	3 cut(s)	36, 323, 402
Sau96I	GGNCC	2 cut(s)	58, 118
SchI	GAGTC	2 cut(s)	147, 442
ScrFI	CCNGG	3 cut(s)	29, 61, 107
SfaNI	GCATC	1 cut(s)	99
SfoI	GGCGCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	3 cut(s)	315, 512, 540
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	173, 297, 565
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	4 cut(s)	192, 195, 204, 383
SspDI	GGCGCC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	159, 332
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	3 cut(s)	27, 59, 105
TaqI	TCGA	2 cut(s)	45, 93
TaqII	GACCGA	1 cut(s)	429
TasI	AATT	3 cut(s)	173, 297, 565
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	5 cut(s)	186, 378, 389, 467, 558
XagI	CCTNNNNNAGG	1 cut(s)	470
XceI	RCATGY	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	159, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.