Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026829.1

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1960

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026829.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgggtctttggtctccggctattaagaataagataatctatgaggatggctctgttcagaaaatcccacagatccctgatgatctgaaagccatttacagaactgtgtgggagatcaagcaaagaacattggttgacatggctgttgataggggatgttacatagatcagagtcaaagtcttaatatacatatggaccaacccaatttcgggaagcttacttcattacatttctatgcttggagacagggtcttaaaacaggaatgtattatctacgatcgcgtgccgcagctgatgccatcaagtttactgttgatactgagagtctcaaggaaaagccaaaggcggcggtggaaagtgatgacaatacccaaatggcacagatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

129

Amino Acids

14.79

Weight (kDa)

7.81

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	283
AciI	CCGC	3 cut(s)	288, 347, 350
AclWI	GGATC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	209, 210
AluBI	AGCT	2 cut(s)	217, 293
AluI	AGCT	2 cut(s)	217, 293
Alw26I	GTCTC	3 cut(s)	18, 238, 332
AlwI	GGATC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	41, 308
BcoDI	GTCTC	3 cut(s)	18, 238, 332
BisI	GCNGC	3 cut(s)	288, 291, 348
BlsI	GCNGC	3 cut(s)	289, 292, 349
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmsI	GCATC	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BpuEI	CTTGAG	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 210
BseGI	GGATG	2 cut(s)	52, 161
BseLI	CCNNNNNNNGG	2 cut(s)	209, 210
BseMII	CTCAG	1 cut(s)	312
BseXI	GCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	283
Bsh1285I	CGRYCG	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	209, 210
BsmAI	GTCTC	3 cut(s)	18, 238, 332
Bso31I	GGTCTC	1 cut(s)	18
Bsp143I	GATC	5 cut(s)	72, 82, 114, 166, 278
BspACI	CCGC	3 cut(s)	288, 347, 350
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	18
BssMI	GATC	5 cut(s)	72, 82, 114, 166, 278
Bst4CI	ACNGT	2 cut(s)	106, 313
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	2 cut(s)	52, 161
BstFNI	CGCG	1 cut(s)	283
BstKTI	GATC	5 cut(s)	75, 85, 117, 169, 281
BstMAI	GTCTC	3 cut(s)	18, 238, 332
BstMBI	GATC	5 cut(s)	72, 82, 114, 166, 278
BstMCI	CGRYCG	1 cut(s)	281
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	52, 161
Cac8I	GCNNGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	196
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	7 cut(s)	20, 51, 92, 143, 217, 293, 340
CviKI_1	RGCY	7 cut(s)	20, 51, 92, 143, 217, 293, 340
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	5 cut(s)	74, 84, 116, 168, 280
DpnII	GATC	5 cut(s)	72, 82, 114, 166, 278
Eco31I	GGTCTC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	196
FaeI	CATG	1 cut(s)	142
FaiI	YATR	7 cut(s)	42, 140, 164, 188, 192, 194, 237
FatI	CATG	1 cut(s)	138
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	288, 291, 348
FokI	GGATG	2 cut(s)	59, 168
Fsp4HI	GCNGC	3 cut(s)	288, 291, 348
GluI	GCNGC	3 cut(s)	288, 291, 348
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	172, 325
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	136, 309
Hpy188I	TCNGA	3 cut(s)	60, 87, 171
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	2 cut(s)	136, 309
HpyCH4III	ACNGT	2 cut(s)	106, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	142
Kzo9I	GATC	5 cut(s)	72, 82, 114, 166, 278
LpnPI	CCDG	4 cut(s)	30, 90, 233, 246
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	74, 84, 116, 168, 280
MboI	GATC	5 cut(s)	72, 82, 114, 166, 278
MflI	RGATCY	1 cut(s)	72
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	2 cut(s)	181, 334
MnlI	CCTC	1 cut(s)	37
MseI	TTAA	3 cut(s)	24, 183, 255
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	5 cut(s)	72, 82, 114, 166, 278
NlaIII	CATG	1 cut(s)	142
PflFI	GACNNNGTC	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	289, 292, 349
Ple19I	CGATCG	1 cut(s)	281
PleI	GAGTC	2 cut(s)	180, 333
PpsI	GAGTC	2 cut(s)	180, 333
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	249
PvuI	CGATCG	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	24, 183, 255
SatI	GCNGC	3 cut(s)	288, 291, 348
Sau3AI	GATC	5 cut(s)	72, 82, 114, 166, 278
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	2 cut(s)	181, 334
SetI	ASST	2 cut(s)	219, 295
SfaNI	GCATC	1 cut(s)	286
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	3 cut(s)	288, 347, 350
TaaI	ACNGT	2 cut(s)	106, 313
TasI	AATT	1 cut(s)	205
TauI	GCSGC	2 cut(s)	290, 350
Tru1I	TTAA	3 cut(s)	24, 183, 255
Tru9I	TTAA	3 cut(s)	24, 183, 255
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	213
Tth111I	GACNNNGTC	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.