Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

90558531 .. 90560447

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG687900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTATGTGATGAAGAGAGACGGGCGCCAGGAGGAGGTCTGCGCCGGAGTCTACAAGGGCGTCACCACTAGCCATCTTGATGAATTGGCTGCTGAGACCGCCGCCGCTATGACCGCCAACCACCCTGACTATGCCTGCTTGGCGGCAAGGATTGTTGTTTCAAACCTACACAAGAACACTAAGAAGTCCTTTTCAGAGACGGTCAAAATTATGTACAACCATGTCAATGATAGATCTGGGCTAGAAGCTCCTCTGCTTGCTGATGATGTTTATGAAATCATCATGAAGGCAAACATTCCTGCTGAGTTTGCAGATAGTGAATTGGAGATTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

111

Amino Acids

12.27

Weight (kDa)

5.09

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	5 cut(s)	99, 102, 105, 114, 143
AcyI	GRCGYC	2 cut(s)	25, 60
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	162
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw26I	GTCTC	3 cut(s)	12, 89, 191
ApeKI	GCWGC	1 cut(s)	89
AspLEI	GCGC	2 cut(s)	27, 44
AsuHPI	GGTGA	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	3 cut(s)	12, 89, 191
BfaI	CTAG	2 cut(s)	69, 242
BfoI	RGCGCY	1 cut(s)	28
BglI	GCCNNNNNGGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	233
BisI	GCNGC	4 cut(s)	90, 102, 105, 144
BlsI	GCNGC	4 cut(s)	91, 103, 106, 145
Bme1390I	CCNGG	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	29
BsaHI	GRCGYC	2 cut(s)	25, 60
BsaI	GGTCTC	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	84, 294
BseRI	GAGGAG	2 cut(s)	47, 240
BseXI	GCAGC	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	3 cut(s)	12, 89, 191
BsmBI	CGTCTC	2 cut(s)	12, 191
Bso31I	GGTCTC	1 cut(s)	89
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	233
BspACI	CCGC	5 cut(s)	99, 102, 105, 114, 143
BspCNI	CTCAG	2 cut(s)	85, 295
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	213
BssMI	GATC	1 cut(s)	233
BssNI	GRCGYC	2 cut(s)	25, 60
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	25, 60
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	136, 258
BstDEI	CTNAG	3 cut(s)	93, 180, 303
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	27, 44
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	3 cut(s)	12, 89, 191
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 113, 140, 308
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	136, 258
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	2 cut(s)	27, 44
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	221, 283
CviJI	RGCY	4 cut(s)	72, 89, 241, 248
CviKI_1	RGCY	4 cut(s)	72, 89, 241, 248
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	93, 180, 303
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	27
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
Esp3I	CGTCTC	2 cut(s)	12, 191
FaeI	CATG	2 cut(s)	224, 286
FaiI	YATR	7 cut(s)	6, 110, 132, 212, 222, 273, 284
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	2 cut(s)	220, 282
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	90, 102, 105, 144
Fsp4HI	GCNGC	4 cut(s)	90, 102, 105, 144
FspBI	CTAG	2 cut(s)	69, 242
GlaI	GCGC	2 cut(s)	26, 43
GluI	GCNGC	4 cut(s)	90, 102, 105, 144
HaeII	RGCGCY	1 cut(s)	28
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	27, 44
Hin1I	GRCGYC	2 cut(s)	25, 60
Hin1II	CATG	2 cut(s)	224, 286
Hin6I	GCGC	2 cut(s)	25, 42
HinP1I	GCGC	2 cut(s)	25, 42
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	77, 283
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 113, 140, 308
HpyF3I	CTNAG	3 cut(s)	93, 180, 303
Hsp92I	GRCGYC	2 cut(s)	25, 60
Hsp92II	CATG	2 cut(s)	224, 286
HspAI	GCGC	2 cut(s)	25, 42
KasI	GGCGCC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	7 cut(s)	14, 41, 58, 138, 148, 222, 312
Lsp1109I	GCAGC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	69, 242
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	1 cut(s)	233
MluCI	AATT	3 cut(s)	83, 207, 320
Mly113I	GGCGCC	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	3 cut(s)	25, 28, 261
MslI	CAYNNNNRTG	2 cut(s)	78, 225
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	98, 113, 140, 308
NarI	GGCGCC	1 cut(s)	25
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	2 cut(s)	224, 286
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	61
PagI	TCATGA	1 cut(s)	282
PkrI	GCNGC	4 cut(s)	91, 103, 106, 145
PleI	GAGTC	1 cut(s)	56
PluTI	GGCGCC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	233
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	2 cut(s)	78, 225
SatI	GCNGC	4 cut(s)	90, 102, 105, 144
Sau3AI	GATC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	29
SetI	ASST	3 cut(s)	39, 168, 250
SfoI	GGCGCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	2 cut(s)	78, 225
Sse9I	AATT	3 cut(s)	83, 207, 320
SsiI	CCGC	5 cut(s)	99, 102, 105, 114, 143
SspDI	GGCGCC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	69, 242
StyD4I	CCNGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	202
TasI	AATT	3 cut(s)	83, 207, 320
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	3 cut(s)	104, 107, 146
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	4 cut(s)	26, 96, 288, 299
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	2 cut(s)	69, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.