Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8237057.1

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 759

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8237057.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atgcttgtaggtgcttttgctgtgtacttggagccctggcatgctgatatatttgactttatggatctaaggaaaaatcatggaaaggaagagaatagagctcgtgatcttttttatgctctttgggtgcctgatctgttcatgaaaagagttgaaagcaatggagattggtcattattttgtcctaatgagtctccaggtttggcagattgctggggtgaaaaatttgaggaactgtacactcgttatgaaagagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

86

Amino Acids

10.31

Weight (kDa)

4.74

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	127
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	2 cut(s)	26, 239
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	35, 196
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	36, 103
BauI	CACGAG	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	37, 198
BcoDI	GTCTC	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	37, 198
BmiI	GGNNCC	2 cut(s)	33, 129
BmrFI	CCNGG	2 cut(s)	37, 198
BpmI	CTGGAG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	37, 198
BseDI	CCNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	36, 103
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	64, 106, 133
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	33, 129
BspPI	GGATC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	166
BsrGI	TGTACA	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	3 cut(s)	64, 106, 133
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
Bst2UI	CCWGG	2 cut(s)	37, 198
Bst4CI	ACNGT	1 cut(s)	237
Bst6I	CTCTTC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	68
BstKTI	GATC	3 cut(s)	67, 109, 136
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	3 cut(s)	64, 106, 133
BstNI	CCWGG	2 cut(s)	37, 198
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	2 cut(s)	35, 196
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	25, 238
CviAII	CATG	3 cut(s)	41, 80, 142
CviJI	RGCY	2 cut(s)	34, 101
CviKI_1	RGCY	2 cut(s)	34, 101
CviQI	GTAC	2 cut(s)	25, 238
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	3 cut(s)	66, 108, 135
DpnII	GATC	3 cut(s)	64, 106, 133
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	101
Eco24I	GRGCYC	2 cut(s)	36, 103
Eco53kI	GAGCTC	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	35, 196
EcoT38I	GRGCYC	2 cut(s)	36, 103
FaeI	CATG	3 cut(s)	44, 83, 145
FaiI	YATR	7 cut(s)	42, 50, 62, 81, 117, 143, 249
FatI	CATG	3 cut(s)	40, 79, 141
FriOI	GRGCYC	2 cut(s)	36, 103
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	180
Hin1II	CATG	3 cut(s)	44, 83, 145
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	2 cut(s)	25, 240
Hpy188III	TCNNGA	2 cut(s)	104, 142
Hpy8I	GTNNAC	2 cut(s)	25, 240
HpyCH4III	ACNGT	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	44, 83, 145
Kzo9I	GATC	3 cut(s)	64, 106, 133
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	6 cut(s)	22, 49, 144, 183, 199, 210
MalI	GATC	3 cut(s)	66, 108, 135
MboI	GATC	3 cut(s)	64, 106, 133
MboII	GAAGA	1 cut(s)	101
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	2 cut(s)	36, 103
MluCI	AATT	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	37, 198
MvaI	CCWGG	2 cut(s)	37, 198
NdeII	GATC	3 cut(s)	64, 106, 133
NlaIII	CATG	3 cut(s)	44, 83, 145
NlaIV	GGNNCC	2 cut(s)	33, 129
NspI	RCATGY	1 cut(s)	44
PaeI	GCATGC	1 cut(s)	44
PagI	TCATGA	1 cut(s)	141
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	35, 196
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	2 cut(s)	35, 196
PspN4I	GGNNCC	2 cut(s)	33, 129
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	26, 239
RsaNI	GTAC	2 cut(s)	25, 238
SacI	GAGCTC	1 cut(s)	103
Sau3AI	GATC	3 cut(s)	64, 106, 133
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	37, 198
SduI	GDGCHC	2 cut(s)	36, 103
SetI	ASST	3 cut(s)	13, 103, 202
SphI	GCATGC	1 cut(s)	44
Sse9I	AATT	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	103
StyD4I	CCNGG	2 cut(s)	35, 196
TaaI	ACNGT	1 cut(s)	237
TasI	AATT	1 cut(s)	224
TatI	WGTACW	2 cut(s)	24, 237
TspDTI	ATGAA	2 cut(s)	130, 158
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.