Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001748

Physical Location & Seq

Genomic Coordinates Reverse (-)

1698011 .. 1698928

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG021400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAAACTGCTGAATGCAACCTGGCATCAATTGCTCTACCACGATTTGTCAGGGAGAAGGCTGTTCCTTTCGAGTCACATCCATCTAAGCTTGCTGGAAGCAGAGGTTCCAAAAATCACTACTTTGACTTTGACAAACTAGCAGAGGTCACTGCAATTGTCACTGTGAACCTCAACAAGATAATTGATGTTAACTACTATCCTGTTGAGAGTGCAAAGACGTCTAATTTACGACATATGCCAATTGGAACCCCATTGCTGATACCTTCATCTTGCTTGGCATGTCCTTTGATTCACCTGAGGCTCAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 map00230 map00240 map00480 map00983 map01100

Pfam Domains

Protein Families

ATP-cone Ribonuc_red_lgC Ribonuc_red_lgN

Protein Analysis

104

Amino Acids

11.52

Weight (kDa)

8.52

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_lgC	PF02867	2 - 83	1.8e-15	Ribonucleotide reductase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21790
fragaria_vesca	FvH4_1g23970 FvH4_1g23970
malus_domestica	MD01G1010100.v1.1 MD15G1339400.v1.1
prunus_persica	Prupe.6G159900_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1 Prupe.8G037800_v2.0.a1
pyrus_communis	pycom01g03750 pycom15g29920
rosa_chinensis	RchiOBHm_Chr1g0314231 RchiOBHm_Chr2g0120091 RchiOBHm_Chr4g0385701
rosa_laevigata	RLG00000015777 RLG00000018519
rosa_multiflora	Rmu_co8237057.1_g000001 Rmu_co8263959.1_g000001 Rmu_sc0000073.1_g000009 Rmu_sc0002754.1_g000003 Rmu_sc0007442.1_g000001 Rmu_sc0013299.1_g000004 Rmu_sc0026829.1_g000001 Rmu_sc0032207.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093370 Rroxscaffold_2G00093380 Rroxscaffold_2G00123740
rosa_rugosa	Rorug02G0226700 Rorug02G0450900 Rorug05G0560100 Rorug06G0079200
rosa_samantha	Rh2AG283200 Rh2BG020700 Rh2BG294500 Rh2CG020400 Rh2CG021300 Rh2CG021400 Rh2CG021500 Rh2CG337900 Rh2DG021000 Rh2DG021100 Rh2DG021200 Rh2DG308200 Rh2DG687900 Rh5BG469900 Rh6AG111200
rosa_wichuraiana	Rw2G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	299
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	23
BfaI	CTAG	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	109, 250
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	221
Bse21I	CCTNAGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	109, 250
BsrDI	GCAATG	1 cut(s)	254
BssNI	GRCGYC	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	166
BstACI	GRCGYC	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	87, 299
BstF5I	GGATG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	21
Bsu36I	CCTNAGG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	79
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 162
Cac8I	GCNNGC	1 cut(s)	93
CviAII	CATG	1 cut(s)	282
CviJI	RGCY	3 cut(s)	62, 91, 304
CviKI_1	RGCY	3 cut(s)	62, 91, 304
DdeI	CTNAG	2 cut(s)	87, 299
Eco81I	CCTNAGG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	285
FaiI	YATR	3 cut(s)	237, 239, 283
FatI	CATG	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	237
FokI	GGATG	1 cut(s)	66
FspBI	CTAG	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	74, 292
HpaI	GTTAAC	1 cut(s)	193
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	169, 193
Hpy8I	GTNNAC	2 cut(s)	169, 193
HpyAV	CCTTC	2 cut(s)	52, 276
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	18, 155, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	87, 299
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	193
LpnPI	CCDG	6 cut(s)	8, 35, 37, 81, 216, 311
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	3 cut(s)	75, 148, 160
MfeI	CAATTG	3 cut(s)	30, 156, 243
MluCI	AATT	5 cut(s)	30, 156, 183, 226, 243
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	4 cut(s)	98, 139, 182, 294
MseI	TTAA	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	23
MunI	CAATTG	3 cut(s)	30, 156, 243
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeI	CATATG	1 cut(s)	237
NlaIII	CATG	1 cut(s)	285
NlaIV	GGNNCC	2 cut(s)	109, 250
NmuCI	GTSAC	3 cut(s)	75, 148, 160
NspI	RCATGY	1 cut(s)	285
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	109, 250
SaqAI	TTAA	1 cut(s)	192
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	8 cut(s)	24, 93, 109, 150, 174, 224, 268, 300
SfaNI	GCATC	1 cut(s)	35
Sse9I	AATT	5 cut(s)	30, 156, 183, 226, 243
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	72
TasI	AATT	5 cut(s)	30, 156, 183, 226, 243
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	2 cut(s)	157, 169
TseFI	GTSAC	3 cut(s)	75, 148, 160
Tsp45I	GTSAC	3 cut(s)	75, 148, 160
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	157, 169
XceI	RCATGY	1 cut(s)	285
XspI	CTAG	1 cut(s)	140
ZraI	GACGTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.