RchiOBHm_Chr6g0282711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004886
Physical Location & Seq
Reverse (-)
45931361 .. 45932096
736 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25347

Sequence Viewer

Length: 324 bp
ATGGACGTGACTGGCCCCAGATGTTTTCGAAGATGTCGACAAGGACTTGGAATTGGAATCGGAATAGAAAGAAAGAGAGATGGAGTGGATGATGGTGTGGTGGATGGAGGAGAGATTGTAGGAGGAGTGCTTCATGAGGACGATGGAGTTAGCGGGGTAGATGAGGTCCGTCGCCAACCCAAACCCGAAGTCGCCATCGCCGCCGCGAGTTCAAGGGTCGAGTCCGTTCACGGTAGCGGGGAAGAGCAGAATCAAAGCGGTGAGGATCAAGGCGGTTCCGGTGTGAAATTAGCTTACCGGCCTTCTGAAATTCTGGCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.25

Weight (kDa)

4.85

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 37
AccII CGCG 1 cut(s) 206
AciI CCGC 6 cut(s) 153, 201, 204, 237, 258, 273
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 1 cut(s) 309
AgsI TTSAA 1 cut(s) 213
AjiI CACGTC 1 cut(s) 7
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AlwI GGATC 1 cut(s) 273
AoxI GGCC 2 cut(s) 13, 299
ApoI RAATTY 1 cut(s) 309
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
AspS9I GGNCC 2 cut(s) 14, 166
AsuHPI GGTGA 1 cut(s) 272
AsuII TTCGAA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 166
BccI CCATC 5 cut(s) 74, 86, 98, 137, 203
BisI GCNGC 2 cut(s) 201, 204
BlsI GCNGC 2 cut(s) 202, 205
Bme18I GGWCC 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 14, 166
BmiI GGNNCC 2 cut(s) 16, 277
Bpu14I TTCGAA 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 16
BseGI GGATG 2 cut(s) 94, 109
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 2 cut(s) 123, 138
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 15, 301
BsiSI CCGG 2 cut(s) 279, 298
BsnI GGCC 2 cut(s) 15, 301
Bsp119I TTCGAA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 6 cut(s) 153, 201, 204, 237, 258, 273
BspANI GGCC 2 cut(s) 15, 301
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 16, 277
BspPI GGATC 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 237
BspT104I TTCGAA 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 297
BssMI GATC 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 28
BstF5I GGATG 2 cut(s) 94, 109
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstUI CGCG 1 cut(s) 206
BsuRI GGCC 2 cut(s) 15, 301
BtgZI GCGATG 1 cut(s) 181
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 94, 109
CciI TCATGA 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 14, 166
CviAII CATG 1 cut(s) 134
CviJI RGCY 4 cut(s) 15, 293, 301, 317
CviKI_1 RGCY 4 cut(s) 15, 293, 301, 317
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 166
FaeI CATG 1 cut(s) 137
FaiI YATR 1 cut(s) 135
FatI CATG 1 cut(s) 133
FauI CCCGC 2 cut(s) 146, 230
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 201, 204
FokI GGATG 2 cut(s) 101, 116
Fsp4HI GCNGC 2 cut(s) 201, 204
GluI GCNGC 2 cut(s) 201, 204
HaeIII GGCC 2 cut(s) 15, 301
HapII CCGG 2 cut(s) 279, 298
Hin1II CATG 1 cut(s) 137
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 3 cut(s) 57, 221, 250
HpaII CCGG 2 cut(s) 279, 298
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 38, 229
Hpy188I TCNGA 2 cut(s) 62, 307
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 38, 229
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 1 cut(s) 137
Kzo9I GATC 1 cut(s) 265
LguI GCTCTTC 1 cut(s) 237
LpnPI CCDG 4 cut(s) 31, 292, 299, 311
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 2 cut(s) 42, 254
MluCI AATT 3 cut(s) 51, 287, 309
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 5 cut(s) 101, 116, 130, 157, 256
MspI CCGG 2 cut(s) 279, 298
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 2 cut(s) 16, 277
NmuCI GTSAC 1 cut(s) 7
NspV TTCGAA 1 cut(s) 28
PagI TCATGA 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 34
PfeI GAWTC 2 cut(s) 57, 250
PkrI GCNGC 2 cut(s) 202, 205
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 16, 277
PspPI GGNCC 2 cut(s) 14, 166
SalI GTCGAC 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 237
SatI GCNGC 2 cut(s) 201, 204
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 2 cut(s) 14, 166
SchI GAGTC 1 cut(s) 230
SetI ASST 3 cut(s) 9, 168, 295
SfuI TTCGAA 1 cut(s) 28
SinI GGWCC 1 cut(s) 166
Sse9I AATT 3 cut(s) 51, 287, 309
SsiI CCGC 6 cut(s) 153, 201, 204, 237, 258, 273
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 1 cut(s) 9
TaqI TCGA 3 cut(s) 28, 37, 219
TasI AATT 3 cut(s) 51, 287, 309
TauI GCSGC 2 cut(s) 203, 206
TfiI GAWTC 2 cut(s) 57, 250
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 2 cut(s) 158, 214
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.