Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004787.1

Orthogroup ID

OG0004886

Physical Location & Seq

Genomic Coordinates Forward (+)

32051 .. 32662

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004787.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgtcagcgacagagatgaagagcgactctgtttctcgagatgctgcaacgcgacaaagacaaggagaaagtggaactttctgctacttccaagcaagaaccgcagtgagctcgatgctgctcctccgcttgctacgacggcattttggcaagaaccgcagtgagctcgatgctgctcctccgcttgctacgatggcattttgggggccaagctatcaatttggagattcaaatactcaacctttcttcatttgtttatctccaattttagccaagctgtcaattcagttttctgggtcgggaaaccatggttcgaagatcagaactttgagagagagagagagagagagagatagagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.28

Weight (kDa)

4.61

Isoelectric Point (pI)

92.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004886)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0282711
rosa_laevigata	RLG00000002958 RLG00000012874 RLG00000013624
rosa_multiflora	Rmu_sc0001091.1_g000013 Rmu_sc0004787.1_g000006 Rmu_sc0008470.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017920 Rroxscaffold_1G00028920 Rroxscaffold_4G00324080 Rroxscaffold_5G00350040 Rroxscaffold_5G00350720 Rroxscaffold_5G00360350 Rroxscaffold_7G00196920 Rroxscaffold_7G00213950
rosa_samantha	Rh2BG087300 Rh2CG089700 Rh4BG132200 Rh4CG168100 Rh4CG168200 Rh5AG480100 Rh5AG494000 Rh5DG440000 Rh6AG078500 Rh6AG237200 Rh7AG256800 Rh7BG004700 Rh7BG132400 Rh7BG321400 Rh7CG273300 Rh7CG432000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	52
AciI	CCGC	4 cut(s)	102, 127, 157, 182
AgsI	TTSAA	1 cut(s)	231
AluBI	AGCT	4 cut(s)	111, 166, 213, 277
AluI	AGCT	4 cut(s)	111, 166, 213, 277
Alw21I	GWGCWC	2 cut(s)	113, 168
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	3 cut(s)	44, 118, 173
AspS9I	GGNCC	1 cut(s)	206
AsuII	TTCGAA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	36
BanII	GRGCYC	2 cut(s)	113, 168
Bbv12I	GWGCWC	2 cut(s)	113, 168
BbvI	GCAGC	3 cut(s)	31, 105, 160
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	4 cut(s)	93, 127, 148, 182
BisI	GCNGC	3 cut(s)	45, 119, 174
BlsI	GCNGC	3 cut(s)	46, 120, 175
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	207
BmsI	GCATC	3 cut(s)	31, 105, 160
Bpu14I	TTCGAA	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	307
BseRI	GAGGAG	2 cut(s)	113, 168
BseXI	GCAGC	3 cut(s)	31, 105, 160
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	208
BsiHKAI	GWGCWC	2 cut(s)	113, 168
BsiHKCI	CYCGRG	1 cut(s)	36
BsnI	GGCC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	113, 168
Bsp143I	GATC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	4 cut(s)	102, 127, 157, 182
BspANI	GGCC	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	14
BspT104I	TTCGAA	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	307
Bst6I	CTCTTC	2 cut(s)	14, 411
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	131, 186
BstDSI	CCRYGG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	52
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 139, 156, 194
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	31, 105, 160
BsuRI	GGCC	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	307
BtsI	GCAGTG	2 cut(s)	111, 166
BtsIMutI	CAGTG	2 cut(s)	111, 166
Cac8I	GCNNGC	2 cut(s)	131, 186
Cfr13I	GGNCC	1 cut(s)	206
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	6 cut(s)	111, 166, 208, 213, 272, 277
CviKI_1	RGCY	6 cut(s)	111, 166, 208, 213, 272, 277
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	14, 411
EarI	CTCTTC	2 cut(s)	14, 411
Ecl136II	GAGCTC	2 cut(s)	111, 166
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	2 cut(s)	113, 168
Eco53kI	GAGCTC	2 cut(s)	111, 166
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	2 cut(s)	111, 166
EcoT14I	CCWWGG	1 cut(s)	307
EcoT38I	GRGCYC	2 cut(s)	113, 168
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	1 cut(s)	311
FaiI	YATR	1 cut(s)	309
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FatI	CATG	1 cut(s)	307
Fnu4HI	GCNGC	3 cut(s)	45, 119, 174
FriOI	GRGCYC	2 cut(s)	113, 168
Fsp4HI	GCNGC	3 cut(s)	45, 119, 174
GluI	GCNGC	3 cut(s)	45, 119, 174
HaeIII	GGCC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	311
HinfI	GANTC	2 cut(s)	26, 227
Hpy188I	TCNGA	1 cut(s)	323
Hpy188III	TCNNGA	3 cut(s)	36, 38, 300
Hpy99I	CGWCG	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 139, 156, 194
Hsp92II	CATG	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	318
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	126, 181
LpnPI	CCDG	1 cut(s)	279
Lsp1109I	GCAGC	3 cut(s)	31, 105, 160
LweI	GCATC	3 cut(s)	31, 105, 160
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MhlI	GDGCHC	2 cut(s)	113, 168
MluCI	AATT	3 cut(s)	218, 264, 282
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	3 cut(s)	134, 189, 412
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	4 cut(s)	101, 139, 156, 194
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	1 cut(s)	207
NspV	TTCGAA	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	46, 120, 175
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp124BI	GAGCTC	2 cut(s)	113, 168
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	206
SacI	GAGCTC	2 cut(s)	113, 168
SapI	GCTCTTC	1 cut(s)	14
SatI	GCNGC	3 cut(s)	45, 119, 174
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	20
SduI	GDGCHC	2 cut(s)	113, 168
SetI	ASST	5 cut(s)	113, 168, 215, 244, 279
SfaNI	GCATC	3 cut(s)	31, 105, 160
Sfr274I	CTCGAG	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	3 cut(s)	218, 264, 282
SsiI	CCGC	4 cut(s)	102, 127, 157, 182
SstI	GAGCTC	2 cut(s)	113, 168
StyI	CCWWGG	1 cut(s)	307
TaqI	TCGA	4 cut(s)	37, 113, 168, 314
TasI	AATT	3 cut(s)	218, 264, 282
TfiI	GAWTC	1 cut(s)	227
TscAI	CASTG	2 cut(s)	111, 166
TseI	GCWGC	3 cut(s)	44, 118, 173
TspDTI	ATGAA	2 cut(s)	32, 238
TspRI	CASTG	2 cut(s)	111, 166
XhoI	CTCGAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.