Rroxscaffold_7G00213950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004886
Physical Location & Seq
Forward (+)
64393543 .. 64395977
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213950.1

Sequence Viewer

Length: 315 bp
ATGAGTTTGAGCTGGAGATCGTTTGAAATTAATGGTTTTTGGCCATATTTTGCTAGGAATGCGCCCTTGCCATACAAGCTAGTTTTACTCACAATAGAAAGGGTTATACATTTTATGTGTTTGAGCTGGACGACTTTCATCTTTGGCCGAAATGTCGGTGGAGAGATTCTTCGAGGCTTGGGAGGAGGTGCAGCGTCACGGCTAGGACCTAGCAGATCGTGCCGGTGCAAGGTTTCATCGGTCGATTCAGACCCACCTCAATACGCCGTCGTTTCCGTGGCCGAGCTCTCACAATTCGAAGTTGTTCGACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.6

Weight (kDa)

9.35

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 3 cut(s) 41, 145, 279
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 26
AluBI AGCT 4 cut(s) 12, 79, 126, 286
AluI AGCT 4 cut(s) 12, 79, 126, 286
Alw21I GWGCWC 1 cut(s) 288
AoxI GGCC 3 cut(s) 41, 145, 279
ApeKI GCWGC 1 cut(s) 191
AseI ATTAAT 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 206
AsuII TTCGAA 1 cut(s) 297
AvaII GGWCC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 43
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 203
BceAI ACGGC 2 cut(s) 215, 251
BfaI CTAG 4 cut(s) 54, 80, 203, 210
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 3 cut(s) 43, 147, 281
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 229
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 3 cut(s) 43, 147, 281
Bsp119I TTCGAA 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 17, 215
BspANI GGCC 3 cut(s) 43, 147, 281
BspT104I TTCGAA 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 17, 215
BstAPI GCANNNNNTGC 1 cut(s) 219
BstBI TTCGAA 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 20, 218
BstMBI GATC 2 cut(s) 17, 215
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 3 cut(s) 59, 76, 219
BstV1I GCAGC 1 cut(s) 203
BsuRI GGCC 3 cut(s) 43, 147, 281
BtgI CCRYGG 1 cut(s) 276
CfoI GCGC 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 206
CseI GACGC 1 cut(s) 183
CviJI RGCY 9 cut(s) 12, 43, 79, 126, 147, 177, 202, 281, 286
CviKI_1 RGCY 9 cut(s) 12, 43, 79, 126, 147, 177, 202, 281, 286
DpnI GATC 2 cut(s) 19, 217
DpnII GATC 2 cut(s) 17, 215
EaeI YGGCCR 3 cut(s) 41, 145, 279
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 288
FaiI YATR 4 cut(s) 46, 73, 107, 116
Fnu4HI GCNGC 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 4 cut(s) 54, 80, 203, 210
GlaI GCGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 3 cut(s) 43, 147, 281
HapII CCGG 1 cut(s) 223
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 64
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 2 cut(s) 166, 245
HpaII CCGG 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 250
Hpy99I CGWCG 1 cut(s) 272
HpyCH4V TGCA 2 cut(s) 191, 228
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 76, 219
HspAI GCGC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 17, 215
LpnPI CCDG 2 cut(s) 112, 236
Lsp1109I GCAGC 1 cut(s) 203
MaeI CTAG 4 cut(s) 54, 80, 203, 210
MaeIII GTNAC 1 cut(s) 195
MalI GATC 2 cut(s) 19, 217
MboI GATC 2 cut(s) 17, 215
MboII GAAGA 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 43
MluCI AATT 2 cut(s) 27, 293
MluNI TGGCCA 1 cut(s) 43
MnlI CCTC 4 cut(s) 167, 176, 179, 267
Mox20I TGGCCA 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 303
MscI TGGCCA 1 cut(s) 43
MseI TTAA 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 43
MspI CCGG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 3 cut(s) 59, 76, 219
NdeII GATC 2 cut(s) 17, 215
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 195
NspV TTCGAA 1 cut(s) 297
PctI GAATGC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 2 cut(s) 166, 245
PkrI GCNGC 1 cut(s) 193
PpuMI RGGWCCY 1 cut(s) 206
PshBI ATTAAT 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 206
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
SacI GAGCTC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 2 cut(s) 17, 215
Sau96I GGNCC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 288
SetI ASST 9 cut(s) 14, 81, 128, 190, 211, 234, 259, 288, 313
SfuI TTCGAA 1 cut(s) 297
SinI GGWCC 1 cut(s) 206
Sse9I AATT 2 cut(s) 27, 293
SspMI CTAG 4 cut(s) 54, 80, 203, 210
SstI GAGCTC 1 cut(s) 288
TaqI TCGA 4 cut(s) 172, 243, 297, 307
TaqII GACCGA 1 cut(s) 229
TasI AATT 2 cut(s) 27, 293
TfiI GAWTC 2 cut(s) 166, 245
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 2 cut(s) 127, 225
TspGWI ACGGA 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 206
VspI ATTAAT 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 4 cut(s) 54, 80, 203, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.