Rroxscaffold_5G00350720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004886
Physical Location & Seq
Reverse (-)
25167686 .. 25170899
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350720.1

Sequence Viewer

Length: 480 bp
ATGGCGAATTGTAGCGCTGTGCTACTAATACTCGATGATGCAATCGGGATTATTACTAGGCTGATCATGACGATGAAGTTTGCTTTGGTGCCGACGTGGTTGAGAATGGAATCTTCTAATACCGATGAAGGTACAACCGTGATGCTAACGATGTCGGTGAAGGGCGACGCTAATGGGTTGAACACCGGATTCCGTTCTCGCTATTTCTGCTGGTCGTGTGTTGGAGACAAGGGTCTCGGTGGTCCTACAAAGGCAACTTCGAGTGCACGGAGATGGGTTTGCCAAATCAATCTAGGCCTTTATGAGTTTGGGCTTCGAATCGGAAGAAAGAGAGAGGGAGTGGATGATGGCATGGTGGACGAAGGAGAGATTGTGGGAGATGGAGTGGGAGGAGCACTTCATGAGGAAGATGGAGTCCATGAGTCGATGAGGTTCGTCACCAACCCAAACCTAAAGTCGCCATCGCCGTCGCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.2

Weight (kDa)

5.38

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AfaI GTAC 1 cut(s) 133
AfeI AGCGCT 1 cut(s) 16
AgsI TTSAA 1 cut(s) 181
AjiI CACGTC 1 cut(s) 96
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
Alw21I GWGCWC 2 cut(s) 268, 397
Alw26I GTCTC 2 cut(s) 219, 239
Alw44I GTGCAC 1 cut(s) 264
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 1 cut(s) 295
ApaLI GTGCAC 1 cut(s) 264
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 169, 430
AsuII TTCGAA 1 cut(s) 316
AvaII GGWCC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 268
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BanI GGYRCC 1 cut(s) 88
Bbv12I GWGCWC 2 cut(s) 268, 397
BccI CCATC 5 cut(s) 267, 341, 374, 404, 469
BceAI ACGGC 1 cut(s) 451
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 219, 239
BfaI CTAG 2 cut(s) 57, 293
BfoI RGCGCY 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 242
BmgBI CACGTC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 2 cut(s) 28, 132
BoxI GACNNNNGTC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 4 cut(s) 357, 369, 387, 399
BseGI GGATG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 268
BshFI GGCC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 268, 397
BsiSI CCGG 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 219, 239
BsnI GGCC 1 cut(s) 297
Bso31I GGTCTC 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 268, 397
Bsp143I GATC 1 cut(s) 63
BspANI GGCC 1 cut(s) 297
BspHI TCATGA 2 cut(s) 66, 400
BspLI GGNNCC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 239
BssMI GATC 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 316
BstF5I GGATG 1 cut(s) 349
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 2 cut(s) 219, 239
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstPAI GACNNNNGTC 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 447
BtrI CACGTC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 349
CciI TCATGA 2 cut(s) 66, 400
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 132
CviAII CATG 4 cut(s) 67, 352, 401, 419
CviJI RGCY 3 cut(s) 61, 297, 313
CviKI_1 RGCY 3 cut(s) 61, 297, 313
CviQI GTAC 1 cut(s) 132
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 242
Eco47III AGCGCT 1 cut(s) 16
FaeI CATG 4 cut(s) 70, 355, 404, 422
FaiI YATR 5 cut(s) 68, 303, 353, 402, 420
FatI CATG 4 cut(s) 66, 351, 400, 418
FbaI TGATCA 1 cut(s) 63
FokI GGATG 1 cut(s) 356
FspBI CTAG 2 cut(s) 57, 293
GlaI GCGC 1 cut(s) 16
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 186
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 17
Hin1II CATG 4 cut(s) 70, 355, 404, 422
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 5 cut(s) 110, 189, 318, 414, 422
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 169, 430
Hpy166II GTNNAC 2 cut(s) 266, 358
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 3 cut(s) 46, 67, 401
Hpy8I GTNNAC 2 cut(s) 266, 358
Hpy99I CGWCG 3 cut(s) 97, 170, 472
HpyAV CCTTC 3 cut(s) 122, 154, 356
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 41, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 4 cut(s) 70, 355, 404, 422
HspAI GCGC 1 cut(s) 15
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 392
LpnPI CCDG 2 cut(s) 196, 199
LweI GCATC 2 cut(s) 28, 132
MaeI CTAG 2 cut(s) 57, 293
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 436
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 3 cut(s) 105, 336, 419
MhlI GDGCHC 2 cut(s) 268, 397
MluCI AATT 1 cut(s) 7
MlyI GAGTC 2 cut(s) 423, 431
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 4 cut(s) 328, 383, 397, 423
MslI CAYNNNNRTG 2 cut(s) 71, 271
MspI CCGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeII GATC 1 cut(s) 63
NlaIII CATG 4 cut(s) 70, 355, 404, 422
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 436
NspV TTCGAA 1 cut(s) 316
PagI TCATGA 2 cut(s) 66, 400
PceI AGGCCT 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PfeI GAWTC 3 cut(s) 110, 189, 318
PleI GAGTC 2 cut(s) 422, 430
PpsI GAGTC 2 cut(s) 422, 430
PshAI GACNNNNGTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 242
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 2 cut(s) 71, 271
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 2 cut(s) 423, 431
SduI GDGCHC 2 cut(s) 268, 397
SetI ASST 4 cut(s) 98, 133, 434, 453
SfaNI GCATC 2 cut(s) 28, 132
SfuI TTCGAA 1 cut(s) 316
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 2 cut(s) 71, 271
Sse9I AATT 1 cut(s) 7
SseBI AGGCCT 1 cut(s) 297
SspMI CTAG 2 cut(s) 57, 293
StuI AGGCCT 1 cut(s) 297
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 98
TaqI TCGA 4 cut(s) 33, 260, 316, 425
TasI AATT 1 cut(s) 7
TfiI GAWTC 3 cut(s) 110, 189, 318
TseFI GTSAC 1 cut(s) 436
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 89, 141, 389
TspGWI ACGGA 2 cut(s) 182, 283
VneI GTGCAC 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 242
XspI CTAG 2 cut(s) 57, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.