Rh4CG168200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004886
Physical Location & Seq
Forward (+)
36907633 .. 36913368
5736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG168200.1

Sequence Viewer

Length: 207 bp
ATGCGGCGGCGCGACAAAGACAAGGAGAAAACTGGAACTTTCTGCTACTTCCAAGCAAGAACCGCGTCGAGCTCGATGCTGCTCCTCCGCTTGCTACGACGGCGTTTTGGGTTGTTAAAAGCTTCAGTCTTTTGTTACTCCCAGTTAGATTTTTTTGGTGTTGATTTTGATGATGGTTTTGTGCACATATTTGAGAGGTGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

8.11

Weight (kDa)

9.57

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 12, 65
AciI CCGC 4 cut(s) 4, 7, 63, 88
AcuI CTGAAG 1 cut(s) 108
AluBI AGCT 2 cut(s) 72, 122
AluI AGCT 2 cut(s) 72, 122
Alw21I GWGCWC 2 cut(s) 74, 186
Alw44I GTGCAC 1 cut(s) 182
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 79
AspLEI GCGC 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 2 cut(s) 74, 186
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BisI GCNGC 3 cut(s) 5, 8, 80
BlsI GCNGC 3 cut(s) 6, 9, 81
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 136
Bse1I ACTGG 2 cut(s) 37, 142
BseNI ACTGG 2 cut(s) 37, 142
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 1 cut(s) 66
Bsh1236I CGCG 2 cut(s) 12, 65
BsiHKAI GWGCWC 2 cut(s) 74, 186
Bsp1286I GDGCHC 2 cut(s) 74, 186
BspACI CCGC 4 cut(s) 4, 7, 63, 88
BspFNI CGCG 2 cut(s) 12, 65
BsrI ACTGG 2 cut(s) 37, 142
BstC8I GCNNGC 1 cut(s) 92
BstFNI CGCG 2 cut(s) 12, 65
BstHHI GCGC 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 62, 100
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 2 cut(s) 12, 65
BstV1I GCAGC 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 12
CseI GACGC 1 cut(s) 54
CviJI RGCY 2 cut(s) 72, 122
CviKI_1 RGCY 2 cut(s) 72, 122
Ecl136II GAGCTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 74
Eco53kI GAGCTC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 74
FaiI YATR 1 cut(s) 188
Fnu4HI GCNGC 3 cut(s) 5, 8, 80
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 3 cut(s) 5, 8, 80
GlaI GCGC 1 cut(s) 11
GluI GCNGC 3 cut(s) 5, 8, 80
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 12
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 2 cut(s) 70, 102
HpyCH4V TGCA 2 cut(s) 184, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 100
HspAI GCGC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 2 cut(s) 18, 155
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 134
MhlI GDGCHC 2 cut(s) 74, 186
MnlI CCTC 2 cut(s) 95, 189
MseI TTAA 1 cut(s) 116
MvnI CGCG 2 cut(s) 12, 65
MwoI GCNNNNNNNGC 2 cut(s) 62, 100
PkrI GCNGC 3 cut(s) 6, 9, 81
Psp124BI GAGCTC 1 cut(s) 74
SacI GAGCTC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 3 cut(s) 5, 8, 80
SduI GDGCHC 2 cut(s) 74, 186
SetI ASST 3 cut(s) 74, 124, 200
SfaNI GCATC 1 cut(s) 66
SsiI CCGC 4 cut(s) 4, 7, 63, 88
SstI GAGCTC 1 cut(s) 74
TaqI TCGA 2 cut(s) 68, 74
TauI GCSGC 2 cut(s) 7, 10
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TseI GCWGC 1 cut(s) 79
VneI GTGCAC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.