Rh7BG132400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004886
Physical Location & Seq
Forward (+)
9857218 .. 9857615
398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG132400.1

Sequence Viewer

Length: 312 bp
ATGGTTTCTGTGAACCAAGACAACGTCCTAAGGGCCACATGCACTGCTCCGTTGAAGAAATCTCAGGCGCCGGCGAAAACCGATGATTCACAGTCGGTTTCTGATCTTGATTTATATGTTGCCATCGCCGCCGCGAGTTCAAGGGTCCCATCAGTTCACGGTGGTGAGGAAGAGCAGAAGCAAAGCGGTGAGGATCGAGGCGGTTCCAGTGTGAAATTAGCTTACCGGCCTTCTGAAATTCTAGCTCACCGAATTATTAAGGAGCTCGAGTCCTCTTCTCCTATCTCTGTGTTGATTGCTTGCTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.92

Weight (kDa)

5.31

Isoelectric Point (pI)

76.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AccII CGCG 1 cut(s) 134
AciI CCGC 4 cut(s) 129, 132, 186, 201
AclWI GGATC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 68
AgsI TTSAA 2 cut(s) 55, 141
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 3 cut(s) 221, 245, 265
AluI AGCT 3 cut(s) 221, 245, 265
Alw21I GWGCWC 1 cut(s) 267
AlwI GGATC 1 cut(s) 201
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 2 cut(s) 33, 227
ApoI RAATTY 1 cut(s) 237
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 33, 145
AsuHPI GGTGA 3 cut(s) 176, 200, 239
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 145
AxyI CCTNAGG 1 cut(s) 29
BanI GGYRCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 267
BccI CCATC 2 cut(s) 131, 157
BfaI CTAG 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 2 cut(s) 129, 132
BlsI GCNGC 2 cut(s) 130, 133
Bme18I GGWCC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 33, 145
BmiI GGNNCC 4 cut(s) 69, 146, 147, 205
BsaHI GRCGYC 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse118I RCCGGY 2 cut(s) 70, 225
Bse1I ACTGG 1 cut(s) 207
Bse21I CCTNAGG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 2 cut(s) 35, 229
BshNI GGYRCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 2 cut(s) 71, 226
BslFI GGGAC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 2 cut(s) 35, 229
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 103, 193
BspACI CCGC 4 cut(s) 129, 132, 186, 201
BspANI GGCC 2 cut(s) 35, 229
BspCNI CTCAG 1 cut(s) 76
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 4 cut(s) 69, 146, 147, 205
BspPI GGATC 1 cut(s) 201
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 67
BsrFI RCCGGY 2 cut(s) 70, 225
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 2 cut(s) 70, 225
BssMI GATC 2 cut(s) 103, 193
BssNI GRCGYC 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 93, 161
Bst6I CTCTTC 2 cut(s) 165, 280
BstACI GRCGYC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 72, 301
BstDEI CTNAG 2 cut(s) 29, 63
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 2 cut(s) 106, 196
BstMBI GATC 2 cut(s) 103, 193
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 42
BstUI CGCG 1 cut(s) 134
Bsu36I CCTNAGG 1 cut(s) 29
BsuRI GGCC 2 cut(s) 35, 229
BtgZI GCGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 214
Cac8I GCNNGC 2 cut(s) 72, 301
CfoI GCGC 1 cut(s) 70
Cfr10I RCCGGY 2 cut(s) 70, 225
Cfr13I GGNCC 2 cut(s) 33, 145
CviAII CATG 1 cut(s) 39
CviJI RGCY 5 cut(s) 35, 221, 229, 245, 265
CviKI_1 RGCY 5 cut(s) 35, 221, 229, 245, 265
DdeI CTNAG 2 cut(s) 29, 63
DinI GGCGCC 1 cut(s) 69
DpnI GATC 2 cut(s) 105, 195
DpnII GATC 2 cut(s) 103, 193
Eam1104I CTCTTC 2 cut(s) 165, 280
EarI CTCTTC 2 cut(s) 165, 280
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 265
Eco81I CCTNAGG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 267
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
FaeI CATG 1 cut(s) 42
FaiI YATR 3 cut(s) 40, 115, 117
FaqI GGGAC 1 cut(s) 131
FatI CATG 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 129, 132
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 2 cut(s) 129, 132
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 69
GluI GCNGC 2 cut(s) 129, 132
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 2 cut(s) 35, 229
HapII CCGG 2 cut(s) 71, 226
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 2 cut(s) 86, 269
HpaII CCGG 2 cut(s) 71, 226
HphI GGTGA 3 cut(s) 176, 200, 239
Hpy166II GTNNAC 2 cut(s) 13, 157
Hpy188I TCNGA 2 cut(s) 103, 235
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 2 cut(s) 13, 157
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 2 cut(s) 93, 161
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 29, 63
HpySE526I ACGT 1 cut(s) 24
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 1 cut(s) 68
KasI GGCGCC 1 cut(s) 67
KflI GGGWCCC 1 cut(s) 145
KroI GCCGGC 1 cut(s) 70
KroNI GCCGGC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 103, 193
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 2 cut(s) 52, 262
LpnPI CCDG 4 cut(s) 50, 84, 220, 239
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 24
MalI GATC 2 cut(s) 105, 195
MboI GATC 2 cut(s) 103, 193
MboII GAAGA 3 cut(s) 67, 182, 267
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 3 cut(s) 215, 237, 252
Mly113I GGCGCC 1 cut(s) 68
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 4 cut(s) 160, 184, 191, 283
MreI CGCCGGCG 1 cut(s) 70
MroNI GCCGGC 1 cut(s) 70
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 2 cut(s) 71, 226
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 128
NaeI GCCGGC 1 cut(s) 72
NarI GGCGCC 1 cut(s) 68
NdeII GATC 2 cut(s) 103, 193
NgoMIV GCCGGC 1 cut(s) 70
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 4 cut(s) 69, 146, 147, 205
NspI RCATGY 1 cut(s) 42
OliI CACNNNNGTG 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 86
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 130, 133
PleI GAGTC 1 cut(s) 277
PluTI GGCGCC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 145
PspN4I GGNNCC 4 cut(s) 69, 146, 147, 205
PspPI GGNCC 2 cut(s) 33, 145
PspPPI RGGWCCY 1 cut(s) 145
PspXI VCTCGAGB 1 cut(s) 266
PsyI GACNNNGTC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 162
SacI GAGCTC 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 129, 132
Sau3AI GATC 2 cut(s) 103, 193
Sau96I GGNCC 2 cut(s) 33, 145
SchI GAGTC 1 cut(s) 278
SduI GDGCHC 1 cut(s) 267
SetI ASST 4 cut(s) 27, 223, 247, 267
SfoI GGCGCC 1 cut(s) 69
Sfr274I CTCGAG 1 cut(s) 266
SgrAI CRCCGGYG 1 cut(s) 70
SinI GGWCC 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 3 cut(s) 215, 237, 252
SsiI CCGC 4 cut(s) 129, 132, 186, 201
SspDI GGCGCC 1 cut(s) 67
SspMI CTAG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 267
TaaI ACNGT 2 cut(s) 93, 161
TaiI ACGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 196, 267
TasI AATT 3 cut(s) 215, 237, 252
TauI GCSGC 2 cut(s) 131, 134
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 2 cut(s) 49, 214
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 2 cut(s) 49, 214
Tth111I GACNNNGTC 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 237
XceI RCATGY 1 cut(s) 42
XhoI CTCGAG 1 cut(s) 266
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.