Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004886

Physical Location & Seq

Genomic Coordinates Reverse (-)

37340120 .. 37341046

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAAGAGGGACTTGGTCGGGTTGGTGGCGGAGAACCCCGAATCAATGGGTTTCGGCGATTCGGACATAGGGTTTTGAGGTCGGCTTCGGGGAAGAATTGGAGCCTCGAGCCCGGAGCCTCAAGTACGAAGCCCGAAGAGAGCAAAGCTAAAGCGGTCGTAAAATGGAGAGTAGTGAAGGAGAAGAGGTTTCCTATCATTAAAGGCATCACTCCCCGGTGGCCCGGTCCAAAGTTGACTCTTTTTACCAATCCCACACCGAAAAGGTTTGCTCCATCCACCGATCCATCACTAAGTATCGAGTTTTATGAGCAAACTCCGGAGCAACAATCGGTGCTAAGGTGTGTTGTTGACTCATCACAAACGGGACTTGCTCATGAGGTAGCATCAACAAATCCAATTGGTCCCGACCGGAGCACGAGTACCTCATGGTTCCATTGGTGCAGCTTTGTTTCAATGCTCTGCACCATAGCAGGTGATGAGTTCCCATCAACATGCGGAACTTGTACTGCAAAATGTGAGACTCGAATGTTTGTCACCCTGCATGTATTTTCTTGTGGGGAGTATAAAAGCTTACTAGCTAAAGAAGATCCCGAGTACGTACCCTATGATGTAAATGGGCAGTATGGTCAATTGTTTGACATTATTGCACGGAGGTACAAGGAGAACACTACAGCTCGAAGTTTGTCACTACAAAAGCAACTCCAACGTTATGCTCCTGTTACCCTCAATCCGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

246

Amino Acids

27.49

Weight (kDa)

9.17

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004886)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0282711
rosa_laevigata	RLG00000002958 RLG00000012874 RLG00000013624
rosa_multiflora	Rmu_sc0001091.1_g000013 Rmu_sc0004787.1_g000006 Rmu_sc0008470.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017920 Rroxscaffold_1G00028920 Rroxscaffold_4G00324080 Rroxscaffold_5G00350040 Rroxscaffold_5G00350720 Rroxscaffold_5G00360350 Rroxscaffold_7G00196920 Rroxscaffold_7G00213950
rosa_samantha	Rh2BG087300 Rh2CG089700 Rh4BG132200 Rh4CG168100 Rh4CG168200 Rh5AG480100 Rh5AG494000 Rh5DG440000 Rh6AG078500 Rh6AG237200 Rh7AG256800 Rh7BG004700 Rh7BG132400 Rh7BG321400 Rh7CG273300 Rh7CG432000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	464
AccIII	TCCGGA	1 cut(s)	319
AciI	CCGC	3 cut(s)	30, 155, 498
AclI	AACGTT	1 cut(s)	709
AclWI	GGATC	2 cut(s)	278, 584
AfaI	GTAC	6 cut(s)	127, 424, 508, 599, 603, 659
AgsI	TTSAA	1 cut(s)	456
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	5 cut(s)	149, 447, 573, 581, 677
AluI	AGCT	5 cut(s)	149, 447, 573, 581, 677
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	1 cut(s)	515
AlwI	GGATC	2 cut(s)	278, 584
Ama87I	CYCGRG	2 cut(s)	107, 593
Aor13HI	TCCGGA	1 cut(s)	319
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	444
AspS9I	GGNCC	3 cut(s)	222, 227, 404
AsuC2I	CCSGG	3 cut(s)	114, 217, 225
AsuHPI	GGTGA	2 cut(s)	488, 529
AvaI	CYCGRG	2 cut(s)	107, 593
AvaII	GGWCC	2 cut(s)	227, 404
BanII	GRGCYC	1 cut(s)	114
BauI	CACGAG	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	456
BccI	CCATC	3 cut(s)	283, 295, 496
BcnI	CCSGG	3 cut(s)	114, 217, 225
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	1 cut(s)	672
BfuAI	ACCTGC	1 cut(s)	464
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
Bme1390I	CCNGG	3 cut(s)	114, 217, 225
Bme18I	GGWCC	2 cut(s)	227, 404
BmeT110I	CYCGRG	2 cut(s)	107, 593
BmgT120I	GGNCC	3 cut(s)	222, 227, 404
BmiI	GGNNCC	4 cut(s)	104, 118, 406, 434
BmrFI	CCNGG	3 cut(s)	114, 217, 225
BmsI	GCATC	2 cut(s)	216, 395
Bpu10I	CCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	106
BpuMI	CCSGG	3 cut(s)	114, 217, 225
BsaAI	YACGTR	1 cut(s)	601
BsaJI	CCNNGG	1 cut(s)	215
BsaWI	WCCGGW	2 cut(s)	319, 411
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 406, 436
BseAI	TCCGGA	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	456
BsgI	GTGCAG	2 cut(s)	448, 463
Bsh1285I	CGRYCG	2 cut(s)	159, 412
BshFI	GGCC	1 cut(s)	223
BsiEI	CGRYCG	2 cut(s)	159, 412
BsiHKAI	GWGCWC	1 cut(s)	419
BsiHKCI	CYCGRG	2 cut(s)	107, 593
BsiSI	CCGG	5 cut(s)	114, 217, 225, 320, 412
BslFI	GGGAC	3 cut(s)	24, 381, 390
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	3 cut(s)	24, 381, 390
BsnI	GGCC	1 cut(s)	223
BsoBI	CYCGRG	2 cut(s)	107, 593
Bsp1286I	GDGCHC	2 cut(s)	114, 419
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	283, 589
BspACI	CCGC	3 cut(s)	30, 155, 498
BspANI	GGCC	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	4 cut(s)	104, 118, 406, 434
BspMI	ACCTGC	1 cut(s)	464
BspPI	GGATC	2 cut(s)	278, 584
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	283, 589
BssSI	CACGAG	1 cut(s)	418
Bst2BI	CACGAG	1 cut(s)	418
Bst6I	CTCTTC	2 cut(s)	132, 179
BstBAI	YACGTR	1 cut(s)	601
BstDEI	CTNAG	2 cut(s)	293, 338
BstF5I	GGATG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	286, 592
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	2 cut(s)	283, 589
BstMCI	CGRYCG	2 cut(s)	159, 412
BstNSI	RCATGY	2 cut(s)	498, 548
BstSCI	CCNGG	3 cut(s)	112, 215, 223
BstSFI	CTRYAG	1 cut(s)	672
BstSNI	TACGTA	1 cut(s)	601
BstV1I	GCAGC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	275
BveI	ACCTGC	1 cut(s)	464
CciI	TCATGA	1 cut(s)	376
Cfr13I	GGNCC	3 cut(s)	222, 227, 404
Csp6I	GTAC	6 cut(s)	126, 423, 507, 598, 602, 658
CviAII	CATG	4 cut(s)	377, 429, 495, 545
CviQI	GTAC	6 cut(s)	126, 423, 507, 598, 602, 658
DdeI	CTNAG	2 cut(s)	293, 338
DpnI	GATC	2 cut(s)	285, 591
DpnII	GATC	2 cut(s)	283, 589
Eam1104I	CTCTTC	2 cut(s)	132, 179
EarI	CTCTTC	2 cut(s)	132, 179
EciI	GGCGGA	1 cut(s)	45
Eco105I	TACGTA	1 cut(s)	601
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	2 cut(s)	227, 404
Eco88I	CYCGRG	2 cut(s)	107, 593
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	4 cut(s)	380, 432, 498, 548
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	3 cut(s)	24, 381, 390
FatI	CATG	4 cut(s)	376, 428, 494, 544
Fnu4HI	GCNGC	1 cut(s)	445
FokI	GGATG	1 cut(s)	262
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	445
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	1 cut(s)	445
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	5 cut(s)	114, 217, 225, 320, 412
Hin1II	CATG	4 cut(s)	380, 432, 498, 548
HincII	GTYRAC	2 cut(s)	237, 352
HindII	GTYRAC	2 cut(s)	237, 352
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	5 cut(s)	42, 60, 238, 353, 523
HpaII	CCGG	5 cut(s)	114, 217, 225, 320, 412
HphI	GGTGA	2 cut(s)	488, 529
Hpy166II	GTNNAC	2 cut(s)	237, 352
Hpy188I	TCNGA	2 cut(s)	65, 735
Hpy188III	TCNNGA	4 cut(s)	320, 377, 407, 593
Hpy8I	GTNNAC	2 cut(s)	237, 352
HpyAV	CCTTC	1 cut(s)	172
HpyCH4IV	ACGT	2 cut(s)	600, 709
HpyCH4V	TGCA	5 cut(s)	444, 465, 512, 544, 650
HpyF3I	CTNAG	2 cut(s)	293, 338
HpySE526I	ACGT	2 cut(s)	600, 709
Hsp92II	CATG	4 cut(s)	380, 432, 498, 548
Kpn2I	TCCGGA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	283, 589
LmnI	GCTCC	6 cut(s)	102, 116, 277, 322, 414, 721
LpnPI	CCDG	8 cut(s)	127, 230, 238, 333, 425, 459, 554, 732
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	2 cut(s)	216, 395
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	2 cut(s)	600, 709
MaeIII	GTNAC	3 cut(s)	535, 687, 721
MalI	GATC	2 cut(s)	285, 591
MboI	GATC	2 cut(s)	283, 589
MboII	GAAGA	5 cut(s)	17, 106, 149, 196, 599
MfeI	CAATTG	2 cut(s)	399, 632
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	2 cut(s)	114, 419
MluCI	AATT	3 cut(s)	97, 399, 632
MlyI	GAGTC	3 cut(s)	232, 347, 517
MmeI	TCCRAC	1 cut(s)	730
MnlI	CCTC	8 cut(s)	72, 116, 130, 180, 373, 436, 648, 737
MroI	TCCGGA	1 cut(s)	319
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	493
MspI	CCGG	5 cut(s)	114, 217, 225, 320, 412
MspR9I	CCNGG	3 cut(s)	114, 217, 225
MunI	CAATTG	2 cut(s)	399, 632
NciI	CCSGG	3 cut(s)	114, 217, 225
NdeII	GATC	2 cut(s)	283, 589
NlaIII	CATG	4 cut(s)	380, 432, 498, 548
NlaIV	GGNNCC	4 cut(s)	104, 118, 406, 434
NmuCI	GTSAC	2 cut(s)	535, 687
NspI	RCATGY	2 cut(s)	498, 548
PaeR7I	CTCGAG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	42, 60
PflFI	GACNNNGTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	446
PleI	GAGTC	3 cut(s)	232, 347, 517
PpsI	GAGTC	3 cut(s)	232, 347, 517
Ppu21I	YACGTR	1 cut(s)	601
Psp1406I	AACGTT	1 cut(s)	709
PspN4I	GGNNCC	4 cut(s)	104, 118, 406, 434
PspPI	GGNCC	3 cut(s)	222, 227, 404
PspXI	VCTCGAGB	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	15
RsaI	GTAC	6 cut(s)	127, 424, 508, 599, 603, 659
RsaNI	GTAC	6 cut(s)	126, 423, 507, 598, 602, 658
RseI	CAYNNNNRTG	1 cut(s)	493
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	2 cut(s)	283, 589
Sau96I	GGNCC	3 cut(s)	222, 227, 404
SchI	GAGTC	3 cut(s)	232, 347, 517
ScrFI	CCNGG	3 cut(s)	114, 217, 225
SduI	GDGCHC	2 cut(s)	114, 419
SfaNI	GCATC	2 cut(s)	216, 395
SfcI	CTRYAG	1 cut(s)	672
Sfr274I	CTCGAG	1 cut(s)	107
SinI	GGWCC	2 cut(s)	227, 404
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	493
SmlI	CTYRAG	2 cut(s)	107, 121
SmoI	CTYRAG	2 cut(s)	107, 121
SnaBI	TACGTA	1 cut(s)	601
Sse9I	AATT	3 cut(s)	97, 399, 632
SsiI	CCGC	3 cut(s)	30, 155, 498
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	3 cut(s)	112, 215, 223
TaiI	ACGT	2 cut(s)	603, 712
TaqI	TCGA	4 cut(s)	108, 300, 526, 679
TasI	AATT	3 cut(s)	97, 399, 632
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	2 cut(s)	42, 60
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	535, 687
TseI	GCWGC	1 cut(s)	444
Tsp45I	GTSAC	2 cut(s)	535, 687
TspGWI	ACGGA	1 cut(s)	667
Tth111I	GACNNNGTC	1 cut(s)	15
VpaK11BI	GGWCC	2 cut(s)	227, 404
XceI	RCATGY	2 cut(s)	498, 548
XhoI	CTCGAG	1 cut(s)	107
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.