Rh7CG273300

Flocculation protein FLO11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004886
Physical Location & Seq
Forward (+)
27351368 .. 27359076
7709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG273300.1

Sequence Viewer

Length: 429 bp
ATGAAGGTTGAGTTACTAGACGGCAAAGCCAATAGCAAGACTAGAGTTTCTGATCTTGATTTATATGTTGCCATCGCCGCCGTGAGTTCGAGGGTCCCATCAGTTCATGGTGGTGAGGAAGAACAGAAGCAAAGCGGTGAGGATCGAGGCGGTTCCGGTACTGAAATAGAAAGAAGCTTTGGGAAGGTGGTCAATGCCAGCGACAGAGACGAAGAGCTCACTCTGTTTCTCGAGATGCGGCGGCGCGACAAAGACAAGGAGAAAACTGGAACTTTCTGCTACTTCCAAGCAAGAACCGCGTTGAGCTCGATGCTGCTCCTCCGCTTGCTACGACGGCGTTTTGGGTTGTTAAAAGCTTCAGTCTTTTGTTACTCCCAGTTAGATTTTTTTGGTGTTGATTTTGATGATGGTTTTGTGCACAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.01

Weight (kDa)

5.78

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 246, 299
AciI CCGC 7 cut(s) 78, 135, 150, 238, 241, 297, 322
AclWI GGATC 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 4 cut(s) 177, 217, 306, 356
AluI AGCT 4 cut(s) 177, 217, 306, 356
Alw21I GWGCWC 3 cut(s) 219, 308, 420
Alw26I GTCTC 1 cut(s) 201
Alw44I GTGCAC 1 cut(s) 416
AlwI GGATC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 230
ApaLI GTGCAC 1 cut(s) 416
ApeKI GCWGC 1 cut(s) 313
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 125, 149
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 420
BanII GRGCYC 2 cut(s) 219, 308
Bbv12I GWGCWC 3 cut(s) 219, 308, 420
BbvI GCAGC 1 cut(s) 300
BccI CCATC 3 cut(s) 80, 106, 401
BceAI ACGGC 3 cut(s) 37, 65, 350
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 2 cut(s) 17, 42
BisI GCNGC 4 cut(s) 78, 239, 242, 314
BlsI GCNGC 4 cut(s) 79, 240, 243, 315
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 3 cut(s) 95, 96, 154
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 2 cut(s) 225, 300
BmuI ACTGGG 1 cut(s) 370
BsaWI WCCGGW 1 cut(s) 155
Bse1I ACTGG 2 cut(s) 271, 376
BseNI ACTGG 2 cut(s) 271, 376
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 1 cut(s) 300
Bsh1236I CGCG 2 cut(s) 246, 299
BsiHKAI GWGCWC 3 cut(s) 219, 308, 420
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 201
BsmBI CGTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 3 cut(s) 219, 308, 420
Bsp143I GATC 2 cut(s) 52, 142
BspACI CCGC 7 cut(s) 78, 135, 150, 238, 241, 297, 322
BspFNI CGCG 2 cut(s) 246, 299
BspLI GGNNCC 3 cut(s) 95, 96, 154
BspPI GGATC 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 207
BsrI ACTGG 2 cut(s) 271, 376
BssMI GATC 2 cut(s) 52, 142
Bst4CI ACNGT 1 cut(s) 422
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 199, 326
BstFNI CGCG 2 cut(s) 246, 299
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 2 cut(s) 55, 145
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 52, 142
BstMWI GCNNNNNNNGC 3 cut(s) 77, 296, 334
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 2 cut(s) 246, 299
BstV1I GCAGC 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 427
Cac8I GCNNGC 2 cut(s) 199, 326
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 159
CviAII CATG 1 cut(s) 107
CviJI RGCY 5 cut(s) 29, 177, 217, 306, 356
CviKI_1 RGCY 5 cut(s) 29, 177, 217, 306, 356
CviQI GTAC 1 cut(s) 159
DpnI GATC 2 cut(s) 54, 144
DpnII GATC 2 cut(s) 52, 142
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Ecl136II GAGCTC 2 cut(s) 217, 306
Eco24I GRGCYC 2 cut(s) 219, 308
Eco47I GGWCC 1 cut(s) 94
Eco53kI GAGCTC 2 cut(s) 217, 306
Eco57I CTGAAG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 230
EcoICRI GAGCTC 2 cut(s) 217, 306
EcoO109I RGGNCCY 1 cut(s) 94
EcoT38I GRGCYC 2 cut(s) 219, 308
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 1 cut(s) 110
FaiI YATR 3 cut(s) 64, 66, 108
FaqI GGGAC 1 cut(s) 80
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 78, 239, 242, 314
FriOI GRGCYC 2 cut(s) 219, 308
Fsp4HI GCNGC 4 cut(s) 78, 239, 242, 314
FspBI CTAG 2 cut(s) 17, 42
GlaI GCGC 1 cut(s) 245
GluI GCNGC 4 cut(s) 78, 239, 242, 314
HapII CCGG 1 cut(s) 156
HhaI GCGC 1 cut(s) 246
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HindIII AAGCTT 2 cut(s) 175, 354
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 125, 149
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 56, 230, 232
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 1 cut(s) 336
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4V TGCA 1 cut(s) 418
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 296, 334
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 1 cut(s) 244
KflI GGGWCCC 1 cut(s) 94
Kzo9I GATC 2 cut(s) 52, 142
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 4 cut(s) 169, 211, 252, 389
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 2 cut(s) 225, 300
MaeI CTAG 2 cut(s) 17, 42
MaeIII GTNAC 2 cut(s) 12, 368
MalI GATC 2 cut(s) 54, 144
MboI GATC 2 cut(s) 52, 142
MboII GAAGA 2 cut(s) 131, 224
MhlI GDGCHC 3 cut(s) 219, 308, 420
MnlI CCTC 5 cut(s) 84, 109, 133, 140, 329
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 1 cut(s) 156
MvnI CGCG 2 cut(s) 246, 299
MwoI GCNNNNNNNGC 3 cut(s) 77, 296, 334
NdeII GATC 2 cut(s) 52, 142
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 3 cut(s) 95, 96, 154
PaeR7I CTCGAG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 207
PkrI GCNGC 4 cut(s) 79, 240, 243, 315
PpuMI RGGWCCY 1 cut(s) 94
Psp124BI GAGCTC 2 cut(s) 219, 308
Psp5II RGGWCCY 1 cut(s) 94
PspN4I GGNNCC 3 cut(s) 95, 96, 154
PspPI GGNCC 1 cut(s) 94
PspPPI RGGWCCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 111
SacI GAGCTC 2 cut(s) 219, 308
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 4 cut(s) 78, 239, 242, 314
Sau3AI GATC 2 cut(s) 52, 142
Sau96I GGNCC 1 cut(s) 94
SduI GDGCHC 3 cut(s) 219, 308, 420
SetI ASST 6 cut(s) 9, 179, 189, 219, 308, 358
SfaNI GCATC 2 cut(s) 225, 300
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 94
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SsiI CCGC 7 cut(s) 78, 135, 150, 238, 241, 297, 322
SspMI CTAG 2 cut(s) 17, 42
SstI GAGCTC 2 cut(s) 219, 308
TaaI ACNGT 1 cut(s) 422
TaqI TCGA 4 cut(s) 89, 145, 231, 308
TauI GCSGC 3 cut(s) 80, 241, 244
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 1 cut(s) 427
TseI GCWGC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 17, 95
TspRI CASTG 1 cut(s) 427
VneI GTGCAC 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 230
XspI CTAG 2 cut(s) 17, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.