Rh7BG321400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004886
Physical Location & Seq
Forward (+)
31430647 .. 31434926
4280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG321400.1

Sequence Viewer

Length: 339 bp
ATGCGGCGACGCGACAAAGACAAGGAGAAAACTGGAACTTTATGCTACTTCCAAGCAAGAACCGCGGCGAGCAGAGAGAGAGAGAGGAACGAGAAAGGGGTAGATGATGGTGAGGTGGGCGATGGAAGAGAAGAAAAGGGAGAGGAATTCGTTACCAAAACTGCTTTGCCTATACATCAAGCAAACACCGGTCCTAAGAAGCCGTTCCTGAGCCATGGCATCAATCACTCGTCCGGCAGCAGACCTCACAACGTCGGGAGACGTCAGATTGGCATGAATTGGGCGAGGAGAAGCCTTCGTCGTCAAGGACAGGTTCTCTGGCTTGGATTTCAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.81

Weight (kDa)

10.45

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 265
AccII CGCG 2 cut(s) 12, 65
AciI CCGC 3 cut(s) 4, 63, 65
AcsI RAATTY 1 cut(s) 146
AcyI GRCGYC 1 cut(s) 262
AgeI ACCGGT 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 1 cut(s) 146
AsiGI ACCGGT 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 249
BccI CCATC 2 cut(s) 101, 116
BceAI ACGGC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 1 cut(s) 337
BglII AGATCT 1 cut(s) 333
BisI GCNGC 3 cut(s) 5, 66, 238
BlsI GCNGC 3 cut(s) 6, 67, 239
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmsI GCATC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 262
BsaJI CCNNGG 2 cut(s) 63, 214
BsaWI WCCGGW 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 37
BseDI CCNNGG 2 cut(s) 63, 214
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 301
BseXI GCAGC 1 cut(s) 249
Bsh1236I CGCG 2 cut(s) 12, 65
BshTI ACCGGT 1 cut(s) 188
BsiSI CCGG 2 cut(s) 189, 234
BsmAI GTCTC 1 cut(s) 253
BsmBI CGTCTC 1 cut(s) 253
Bsp143I GATC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 3 cut(s) 4, 63, 65
BspCNI CTCAG 1 cut(s) 201
BspFNI CGCG 2 cut(s) 12, 65
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 63, 214
BssMI GATC 1 cut(s) 333
BssNI GRCGYC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 195, 209
BstDSI CCRYGG 2 cut(s) 63, 214
BstFNI CGCG 2 cut(s) 12, 65
BstKTI GATC 1 cut(s) 336
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 1 cut(s) 333
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstUI CGCG 2 cut(s) 12, 65
BstV1I GCAGC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BtgI CCRYGG 2 cut(s) 63, 214
BtgZI GCGATG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 191
Cfr42I CCGCGG 1 cut(s) 66
CseI GACGC 1 cut(s) 18
CspAI ACCGGT 1 cut(s) 188
CviAII CATG 2 cut(s) 215, 274
CviJI RGCY 4 cut(s) 202, 213, 294, 322
CviKI_1 RGCY 4 cut(s) 202, 213, 294, 322
DdeI CTNAG 2 cut(s) 195, 209
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 2 cut(s) 218, 277
FaiI YATR 4 cut(s) 43, 173, 216, 275
FatI CATG 2 cut(s) 214, 273
Fnu4HI GCNGC 3 cut(s) 5, 66, 238
Fsp4HI GCNGC 3 cut(s) 5, 66, 238
FspBI CTAG 1 cut(s) 337
GluI GCNGC 3 cut(s) 5, 66, 238
HapII CCGG 2 cut(s) 189, 234
HgaI GACGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 2 cut(s) 218, 277
HpaII CCGG 2 cut(s) 189, 234
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 2 cut(s) 267, 333
Hpy188III TCNNGA 2 cut(s) 208, 256
Hpy99I CGWCG 3 cut(s) 12, 257, 303
HpyAV CCTTC 1 cut(s) 305
HpyCH4IV ACGT 2 cut(s) 252, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 195, 209
HpySE526I ACGT 2 cut(s) 252, 262
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 2 cut(s) 218, 277
KspI CCGCGG 1 cut(s) 66
Kzo9I GATC 1 cut(s) 333
LpnPI CCDG 6 cut(s) 18, 202, 221, 247, 296, 304
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 1 cut(s) 228
MaeI CTAG 1 cut(s) 337
MaeII ACGT 2 cut(s) 252, 262
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 2 cut(s) 138, 143
MflI RGATCY 1 cut(s) 333
MluCI AATT 2 cut(s) 146, 277
MnlI CCTC 5 cut(s) 78, 106, 136, 255, 279
MroXI GAANNNNTTC 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 2 cut(s) 189, 234
MvnI CGCG 2 cut(s) 12, 65
MwoI GCNNNNNNNGC 1 cut(s) 62
NcoI CCATGG 1 cut(s) 214
NdeII GATC 1 cut(s) 333
NlaIII CATG 2 cut(s) 218, 277
PdmI GAANNNNTTC 1 cut(s) 203
PinAI ACCGGT 1 cut(s) 188
PkrI GCNGC 3 cut(s) 6, 67, 239
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 333
SacII CCGCGG 1 cut(s) 66
SatI GCNGC 3 cut(s) 5, 66, 238
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 1 cut(s) 191
SetI ASST 5 cut(s) 117, 247, 255, 265, 315
SfaNI GCATC 1 cut(s) 228
Sfr303I CCGCGG 1 cut(s) 66
SgrBI CCGCGG 1 cut(s) 66
SinI GGWCC 1 cut(s) 191
Sse9I AATT 2 cut(s) 146, 277
SsiI CCGC 3 cut(s) 4, 63, 65
SspMI CTAG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 214
TaiI ACGT 2 cut(s) 255, 265
TasI AATT 2 cut(s) 146, 277
TauI GCSGC 2 cut(s) 7, 68
TseI GCWGC 1 cut(s) 237
TspDTI ATGAA 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 337
ZraI GACGTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.