RLG00000013624

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004886
Physical Location & Seq
Forward (+)
34245988 .. 34246637
650 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013624

Sequence Viewer

Length: 357 bp
ATGACGTTCCCTCTTGCGCTGATCCTAACGCTGCTTCCGAGTGGCAACAAATACAGCAGCTCCAGCCAACCAATCTCAGGAGTCAGGACTCCTATATCTCCTCCCTCACGATGGTGTTTCGAATTCAGCAATGGCTTGCAGTGCCCCAAACCTGATCTTCAAGGTAGTGACGGTGTGGATTTTGGGCCTCCGGAGTTTGATTGGCTCGAATCGGAGACTACCGTGACAAATTGTGGTGCTGTGTTACCAATACGCGATGATGCAATCGTGGTTGTTACTAGGTGTCTCCGGTGGTCCAACGAAGTCGACTTTGGAGTACCTGGAGATGGGTGGCCAAATCAATCTGAGCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.85

Weight (kDa)

4.24

Isoelectric Point (pI)

63.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AccII CGCG 1 cut(s) 255
AccIII TCCGGA 1 cut(s) 190
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 332
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 3 cut(s) 77, 111, 326
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw26I GTCTC 2 cut(s) 209, 290
AlwI GGATC 1 cut(s) 16
Aor13HI TCCGGA 1 cut(s) 190
AoxI GGCC 2 cut(s) 185, 332
ApeKI GCWGC 2 cut(s) 31, 57
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 185, 294
AsuII TTCGAA 1 cut(s) 120
AvaII GGWCC 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 146
BalI TGGCCA 1 cut(s) 334
BbvI GCAGC 2 cut(s) 18, 69
BccI CCATC 2 cut(s) 105, 320
BciT130I CCWGG 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 209, 290
BfaI CTAG 1 cut(s) 279
BisI GCNGC 2 cut(s) 32, 58
BlsI GCNGC 2 cut(s) 33, 59
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 185, 294
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 250
BpmI CTGGAG 2 cut(s) 46, 342
Bpu14I TTCGAA 1 cut(s) 120
BsaWI WCCGGW 2 cut(s) 190, 288
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 111, 326
Bse3DI GCAATG 1 cut(s) 136
BseAI TCCGGA 1 cut(s) 190
BseBI CCWGG 1 cut(s) 321
BseLI CCNNNNNNNGG 3 cut(s) 77, 111, 326
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 90, 336
BseRI GAGGAG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 2 cut(s) 18, 69
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 2 cut(s) 187, 334
BsiSI CCGG 2 cut(s) 191, 289
BslI CCNNNNNNNGG 3 cut(s) 77, 111, 326
BsmAI GTCTC 2 cut(s) 209, 290
BsnI GGCC 2 cut(s) 187, 334
Bsp119I TTCGAA 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 146
Bsp13I TCCGGA 1 cut(s) 190
Bsp143I GATC 2 cut(s) 21, 154
BspANI GGCC 2 cut(s) 187, 334
BspCNI CTCAG 2 cut(s) 89, 337
BspEI TCCGGA 1 cut(s) 190
BspFNI CGCG 1 cut(s) 255
BspPI GGATC 1 cut(s) 16
BspT104I TTCGAA 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 136
BssMI GATC 2 cut(s) 21, 154
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 173, 223
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 76, 345
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 2 cut(s) 24, 157
BstMAI GTCTC 2 cut(s) 209, 290
BstMBI GATC 2 cut(s) 21, 154
BstMWI GCNNNNNNNGC 2 cut(s) 63, 141
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 18, 69
BsuRI GGCC 2 cut(s) 187, 334
BtgZI GCGATG 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 137
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 185, 294
Csp6I GTAC 1 cut(s) 317
CviJI RGCY 7 cut(s) 60, 66, 135, 187, 205, 334, 349
CviKI_1 RGCY 7 cut(s) 60, 66, 135, 187, 205, 334, 349
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 76, 345
DpnI GATC 2 cut(s) 23, 156
DpnII GATC 2 cut(s) 21, 154
EaeI YGGCCR 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 319
FaiI YATR 2 cut(s) 95, 355
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 32, 58
Fsp4HI GCNGC 2 cut(s) 32, 58
FspBI CTAG 1 cut(s) 279
GlaI GCGC 1 cut(s) 18
GluI GCNGC 2 cut(s) 32, 58
GsuI CTGGAG 2 cut(s) 46, 342
HaeIII GGCC 2 cut(s) 187, 334
HapII CCGG 2 cut(s) 191, 289
HhaI GCGC 1 cut(s) 19
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 3 cut(s) 81, 88, 209
HpaII CCGG 2 cut(s) 191, 289
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 39, 214, 346
Hpy188III TCNNGA 4 cut(s) 78, 85, 108, 191
Hpy8I GTNNAC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 173, 223
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 2 cut(s) 139, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 141
HpyF3I CTNAG 2 cut(s) 76, 345
HpySE526I ACGT 1 cut(s) 5
HspAI GCGC 1 cut(s) 17
Kpn2I TCCGGA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 21, 154
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 8 cut(s) 63, 70, 76, 165, 204, 302, 306, 333
Lsp1109I GCAGC 2 cut(s) 18, 69
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 4 cut(s) 167, 223, 243, 274
MalI GATC 2 cut(s) 23, 156
MboI GATC 2 cut(s) 21, 154
MboII GAAGA 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 146
MlsI TGGCCA 1 cut(s) 334
MluCI AATT 2 cut(s) 122, 229
MluNI TGGCCA 1 cut(s) 334
MlyI GAGTC 2 cut(s) 82, 90
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 4 cut(s) 21, 111, 115, 198
Mox20I TGGCCA 1 cut(s) 334
MroI TCCGGA 1 cut(s) 190
MscI TGGCCA 1 cut(s) 334
MslI CAYNNNNRTG 1 cut(s) 112
Msp20I TGGCCA 1 cut(s) 334
MspI CCGG 2 cut(s) 191, 289
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 63, 141
NdeII GATC 2 cut(s) 21, 154
NmuCI GTSAC 2 cut(s) 167, 223
NspV TTCGAA 1 cut(s) 120
OliI CACNNNNGTG 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 2 cut(s) 33, 59
PleI GAGTC 2 cut(s) 82, 89
PpsI GAGTC 2 cut(s) 82, 89
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspPI GGNCC 2 cut(s) 185, 294
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 112
SalI GTCGAC 1 cut(s) 305
SatI GCNGC 2 cut(s) 32, 58
Sau3AI GATC 2 cut(s) 21, 154
Sau96I GGNCC 2 cut(s) 185, 294
SchI GAGTC 2 cut(s) 82, 90
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 146
SetI ASST 6 cut(s) 8, 62, 154, 166, 284, 322
SfaNI GCATC 1 cut(s) 250
SfuI TTCGAA 1 cut(s) 120
SinI GGWCC 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 112
Sse9I AATT 2 cut(s) 122, 229
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 173, 223
TaiI ACGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 120, 207, 306
TasI AATT 2 cut(s) 122, 229
TfiI GAWTC 1 cut(s) 209
TscAI CASTG 1 cut(s) 146
TseFI GTSAC 2 cut(s) 167, 223
TseI GCWGC 2 cut(s) 31, 57
Tsp45I GTSAC 2 cut(s) 167, 223
TspRI CASTG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.