Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004886

Physical Location & Seq

Genomic Coordinates Forward (+)

82404770 .. 82411273

Gene Structure 6504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG480100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCAGATTTGCCGGGGGCGTCGCCGTGTGAGAGCCAAGTCGGATCTCCAGCGGAGGCCGATCGTGAGAGGCAACGTGGATTTGGATTCCAAGGAAGGGAGGAGAAGAAGCAGAGCAGTGAGGATCGAGGCAGTTTCGGTGGGAAATTTGCTTACTGGCCTTCGGAAATTCCGGTTCATCGGAGAATTAAGGAGAGTCCTCTTAGCTTCGATGCCATTTTCAAAACATTTGGGACGACAATGCGTTCTTGGCCGCCATTGGAGATTAACTCCGGAATCTCGACGAAATCCAAGCCTTCCGATTCGGCCTCCGACGAGGCGTCCGGGTGGTGCAGCTCCGCCAAGCTCCTATACGCCGACTTGATCTCCGTCTGTGACACGTTGTTCTTCACCTGCAGAACCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0005975 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010154 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0022414 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0033993 GO:0034284 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0045995 GO:0046460 GO:0046463 GO:0046486 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0071704 GO:0097305 GO:0098827 GO:1900140 GO:1901576 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00561 ko00830 ko01100 ko04975 map00561 map00830 map01100 map04975

Pfam Domains

Protein Families

MBOAT

Protein Analysis

135

Amino Acids

14.84

Weight (kDa)

5.86

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004886)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0282711
rosa_laevigata	RLG00000002958 RLG00000012874 RLG00000013624
rosa_multiflora	Rmu_sc0001091.1_g000013 Rmu_sc0004787.1_g000006 Rmu_sc0008470.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017920 Rroxscaffold_1G00028920 Rroxscaffold_4G00324080 Rroxscaffold_5G00350040 Rroxscaffold_5G00350720 Rroxscaffold_5G00360350 Rroxscaffold_7G00196920 Rroxscaffold_7G00213950
rosa_samantha	Rh2BG087300 Rh2CG089700 Rh4BG132200 Rh4CG168100 Rh4CG168200 Rh5AG480100 Rh5AG494000 Rh5DG440000 Rh6AG078500 Rh6AG237200 Rh7AG256800 Rh7BG004700 Rh7BG132400 Rh7BG321400 Rh7CG273300 Rh7CG432000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	401
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	3 cut(s)	53, 254, 339
AclWI	GGATC	2 cut(s)	52, 132
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	146, 168
AcyI	GRCGYC	2 cut(s)	20, 320
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	1 cut(s)	223
AhdI	GACNNNNNGTC	1 cut(s)	319
AluBI	AGCT	3 cut(s)	207, 336, 346
AluI	AGCT	3 cut(s)	207, 336, 346
AlwI	GGATC	2 cut(s)	52, 132
Aor13HI	TCCGGA	1 cut(s)	272
AoxI	GGCC	4 cut(s)	57, 158, 251, 306
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	2 cut(s)	146, 168
AsuC2I	CCSGG	2 cut(s)	15, 325
AsuHPI	GGTGA	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	10
BcnI	CCSGG	2 cut(s)	15, 325
BfmI	CTRYAG	1 cut(s)	394
BfuAI	ACCTGC	1 cut(s)	401
BisI	GCNGC	2 cut(s)	254, 334
BlsI	GCNGC	2 cut(s)	255, 335
Bme1390I	CCNGG	2 cut(s)	15, 325
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	15, 325
BmsI	GCATC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpmI	CTGGAG	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	15, 325
BsaHI	GRCGYC	2 cut(s)	20, 320
BsaJI	CCNNGG	2 cut(s)	14, 91
BsaWI	WCCGGW	2 cut(s)	172, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	14, 91
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	352
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	4 cut(s)	59, 160, 253, 308
BsiEI	CGRYCG	1 cut(s)	64
BsiSI	CCGG	4 cut(s)	14, 173, 273, 324
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	4 cut(s)	59, 160, 253, 308
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	4 cut(s)	44, 61, 124, 363
BspACI	CCGC	3 cut(s)	53, 254, 339
BspANI	GGCC	4 cut(s)	59, 160, 253, 308
BspEI	TCCGGA	1 cut(s)	272
BspMAI	CTGCAG	1 cut(s)	398
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	2 cut(s)	52, 132
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	14, 91
BssMI	GATC	4 cut(s)	44, 61, 124, 363
BssNI	GRCGYC	2 cut(s)	20, 320
BssT1I	CCWWGG	1 cut(s)	91
BstACI	GRCGYC	2 cut(s)	20, 320
BstDEI	CTNAG	1 cut(s)	203
BstKTI	GATC	4 cut(s)	47, 64, 127, 366
BstMBI	GATC	4 cut(s)	44, 61, 124, 363
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	13, 323
BstSFI	CTRYAG	1 cut(s)	394
BstV1I	GCAGC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	4 cut(s)	59, 160, 253, 308
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	124
BveI	ACCTGC	1 cut(s)	401
CseI	GACGC	2 cut(s)	9, 309
CviJI	RGCY	9 cut(s)	36, 59, 160, 207, 253, 295, 308, 336, 346
CviKI_1	RGCY	9 cut(s)	36, 59, 160, 207, 253, 295, 308, 336, 346
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	4 cut(s)	46, 63, 126, 365
DpnII	GATC	4 cut(s)	44, 61, 124, 363
DriI	GACNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	251
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaiI	YATR	1 cut(s)	352
FaqI	GGGAC	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	254, 334
Fsp4HI	GCNGC	2 cut(s)	254, 334
GluI	GCNGC	2 cut(s)	254, 334
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	4 cut(s)	59, 160, 253, 308
HapII	CCGG	4 cut(s)	14, 173, 273, 324
HgaI	GACGC	2 cut(s)	9, 309
Hin1I	GRCGYC	2 cut(s)	20, 320
HinfI	GANTC	4 cut(s)	87, 196, 276, 302
HpaII	CCGG	4 cut(s)	14, 173, 273, 324
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	6 cut(s)	7, 44, 166, 183, 301, 313
Hpy188III	TCNNGA	3 cut(s)	65, 273, 280
Hpy99I	CGWCG	3 cut(s)	25, 286, 317
HpyAV	CCTTC	3 cut(s)	90, 171, 306
HpyCH4IV	ACGT	2 cut(s)	76, 380
HpyCH4V	TGCA	2 cut(s)	333, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	2 cut(s)	76, 380
Hsp92I	GRCGYC	2 cut(s)	20, 320
Kpn2I	TCCGGA	1 cut(s)	272
Kzo9I	GATC	4 cut(s)	44, 61, 124, 363
LmnI	GCTCC	2 cut(s)	341, 351
LpnPI	CCDG	6 cut(s)	27, 63, 142, 186, 286, 337
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	202
MaeII	ACGT	2 cut(s)	76, 380
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	4 cut(s)	46, 63, 126, 365
MboI	GATC	4 cut(s)	44, 61, 124, 363
MboII	GAAGA	2 cut(s)	118, 379
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	3 cut(s)	146, 168, 186
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	22, 336
MnlI	CCTC	8 cut(s)	49, 63, 94, 115, 122, 210, 310, 319
MroI	TCCGGA	1 cut(s)	272
MseI	TTAA	2 cut(s)	189, 267
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	4 cut(s)	14, 173, 273, 324
MspR9I	CCNGG	2 cut(s)	15, 325
MwoI	GCNNNNNNNGC	1 cut(s)	250
NciI	CCSGG	2 cut(s)	15, 325
NdeII	GATC	4 cut(s)	44, 61, 124, 363
NmuCI	GTSAC	1 cut(s)	374
PaqCI	CACCTGC	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	87, 276, 302
PkrI	GCNGC	2 cut(s)	255, 335
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	44
PvuI	CGATCG	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	189, 267
SatI	GCNGC	2 cut(s)	254, 334
Sau3AI	GATC	4 cut(s)	44, 61, 124, 363
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	15, 325
SetI	ASST	7 cut(s)	79, 209, 338, 348, 383, 395, 404
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	394
Sse9I	AATT	3 cut(s)	146, 168, 186
SsiI	CCGC	3 cut(s)	53, 254, 339
StyD4I	CCNGG	2 cut(s)	13, 323
StyI	CCWWGG	1 cut(s)	91
TaiI	ACGT	2 cut(s)	79, 383
TaqI	TCGA	3 cut(s)	127, 210, 281
TasI	AATT	3 cut(s)	146, 168, 186
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	3 cut(s)	87, 276, 302
Tru1I	TTAA	2 cut(s)	189, 267
Tru9I	TTAA	2 cut(s)	189, 267
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	2 cut(s)	146, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.