Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004886

Physical Location & Seq

Genomic Coordinates Forward (+)

70525882 .. 70526796

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG440000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCAAATCCTAGCCTCTCCCTAACGGCGTTCTCCTTTGCGCTGCTCTCGAGAGGCGCTGCTCTCGAGAGGCAAAGAACACAGCGGCTGCGACCACCCAATCTCAAGACGCCTATGTCCCTTCCCTCTCGATGGTGTTTTGAATTCAGCAATGGTTGGACTGCCCTCTTGGGCTGGATCCTCTCTCTCTCTCTCAACTTCTCTGGTCGCTGCGGGTTTTTGGCGTCTCTTCTAAATCTGGGCGGCGGCCAGATCTTAGTTTGCACCAAGGGCATGCGGTGCCCCGGACCCGATGCCAAAAGTAGTGATGTGGCTTTTGGGCCACCGGAGGTTGATTGGCTCGAATCGGAGACTACTATGACAGATTGTGGCGTTGTCCTAGTTGTAACTATGCTGATCATGGAGGAGAAGTTGTGCAGTTTTTGGGCTGGGATGATGCTTTGGCGCCAATGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.69

Weight (kDa)

8.22

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004886)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0282711
rosa_laevigata	RLG00000002958 RLG00000012874 RLG00000013624
rosa_multiflora	Rmu_sc0001091.1_g000013 Rmu_sc0004787.1_g000006 Rmu_sc0008470.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017920 Rroxscaffold_1G00028920 Rroxscaffold_4G00324080 Rroxscaffold_5G00350040 Rroxscaffold_5G00350720 Rroxscaffold_5G00360350 Rroxscaffold_7G00196920 Rroxscaffold_7G00213950
rosa_samantha	Rh2BG087300 Rh2CG089700 Rh4BG132200 Rh4CG168100 Rh4CG168200 Rh5AG480100 Rh5AG494000 Rh5DG440000 Rh6AG078500 Rh6AG237200 Rh7AG256800 Rh7BG004700 Rh7BG132400 Rh7BG321400 Rh7CG273300 Rh7CG432000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	115
AccB1I	GGYRCC	2 cut(s)	279, 444
AciI	CCGC	5 cut(s)	85, 213, 243, 246, 277
AclWI	GGATC	2 cut(s)	172, 185
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	143
AcyI	GRCGYC	3 cut(s)	110, 224, 445
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	143
Alw26I	GTCTC	2 cut(s)	231, 344
AlwI	GGATC	2 cut(s)	172, 185
AlwNI	CAGNNNCTG	1 cut(s)	88
Ama87I	CYCGRG	2 cut(s)	49, 65
AoxI	GGCC	2 cut(s)	247, 320
ApeKI	GCWGC	4 cut(s)	43, 59, 88, 210
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	3 cut(s)	43, 59, 447
AspS9I	GGNCC	2 cut(s)	287, 320
AsuC2I	CCSGG	1 cut(s)	285
AvaI	CYCGRG	2 cut(s)	49, 65
AvaII	GGWCC	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	284
BamHI	GGATCC	1 cut(s)	177
BanI	GGYRCC	2 cut(s)	279, 444
BbvI	GCAGC	4 cut(s)	30, 46, 75, 197
BccI	CCATC	1 cut(s)	126
BceAI	ACGGC	1 cut(s)	42
BclI	TGATCA	1 cut(s)	396
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	231, 344
BfaI	CTAG	2 cut(s)	12, 380
BfoI	RGCGCY	2 cut(s)	60, 448
BglI	GCCNNNNNGGC	1 cut(s)	453
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	7 cut(s)	44, 60, 86, 89, 211, 244, 247
BlsI	GCNGC	7 cut(s)	45, 61, 87, 90, 212, 245, 248
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	287
BmeT110I	CYCGRG	2 cut(s)	49, 65
BmgT120I	GGNCC	2 cut(s)	287, 320
BmiI	GGNNCC	4 cut(s)	179, 281, 289, 446
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	283, 426
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	285
BsaHI	GRCGYC	3 cut(s)	110, 224, 445
BsaJI	CCNNGG	2 cut(s)	267, 283
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	4 cut(s)	395, 398, 425, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	157
BseDI	CCNNGG	2 cut(s)	267, 283
BseGI	GGATG	1 cut(s)	438
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	419
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	4 cut(s)	30, 46, 75, 197
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	249, 322
BshNI	GGYRCC	2 cut(s)	279, 444
BsiHKCI	CYCGRG	2 cut(s)	49, 65
BsiSI	CCGG	2 cut(s)	285, 326
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	231, 344
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	249, 322
BsoBI	CYCGRG	2 cut(s)	49, 65
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	3 cut(s)	177, 252, 396
BspACI	CCGC	5 cut(s)	85, 213, 243, 246, 277
BspANI	GGCC	2 cut(s)	249, 322
BspLI	GGNNCC	4 cut(s)	179, 281, 289, 446
BspPI	GGATC	2 cut(s)	172, 185
BspT107I	GGYRCC	2 cut(s)	279, 444
BsrDI	GCAATG	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	267, 283
BssMI	GATC	3 cut(s)	177, 252, 396
BssNI	GRCGYC	3 cut(s)	110, 224, 445
BssT1I	CCWWGG	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	3 cut(s)	110, 224, 445
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	438
BstH2I	RGCGCY	2 cut(s)	60, 448
BstHHI	GCGC	3 cut(s)	43, 59, 447
BstKTI	GATC	3 cut(s)	180, 255, 399
BstMAI	GTCTC	2 cut(s)	231, 344
BstMBI	GATC	3 cut(s)	177, 252, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	270, 279, 453
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	4 cut(s)	30, 46, 75, 197
BstX2I	RGATCY	2 cut(s)	177, 252
BstYI	RGATCY	2 cut(s)	177, 252
BsuRI	GGCC	2 cut(s)	249, 322
BtsCI	GGATG	1 cut(s)	438
Cac8I	GCNNGC	1 cut(s)	275
CaiI	CAGNNNCTG	1 cut(s)	88
CfoI	GCGC	3 cut(s)	43, 59, 447
Cfr13I	GGNCC	2 cut(s)	287, 320
CseI	GACGC	2 cut(s)	118, 213
CviAII	CATG	2 cut(s)	274, 400
CviJI	RGCY	9 cut(s)	15, 88, 174, 249, 314, 322, 340, 428, 456
CviKI_1	RGCY	9 cut(s)	15, 88, 174, 249, 314, 322, 340, 428, 456
DdeI	CTNAG	1 cut(s)	256
DinI	GGCGCC	1 cut(s)	446
DpnI	GATC	3 cut(s)	179, 254, 398
DpnII	GATC	3 cut(s)	177, 252, 396
DrdI	GACNNNNNNGTC	1 cut(s)	115
DseDI	GACNNNNNNGTC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	287
Eco88I	CYCGRG	2 cut(s)	49, 65
EcoRI	GAATTC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	446
EheI	GGCGCC	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	2 cut(s)	277, 403
FaiI	YATR	5 cut(s)	116, 275, 359, 392, 401
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	273, 399
FauI	CCCGC	1 cut(s)	206
FbaI	TGATCA	1 cut(s)	396
Fnu4HI	GCNGC	7 cut(s)	44, 60, 86, 89, 211, 244, 247
FokI	GGATG	1 cut(s)	445
Fsp4HI	GCNGC	7 cut(s)	44, 60, 86, 89, 211, 244, 247
FspBI	CTAG	2 cut(s)	12, 380
GlaI	GCGC	3 cut(s)	42, 58, 446
GluI	GCNGC	7 cut(s)	44, 60, 86, 89, 211, 244, 247
GsaI	CCCAGC	1 cut(s)	432
HaeII	RGCGCY	2 cut(s)	60, 448
HaeIII	GGCC	2 cut(s)	249, 322
HapII	CCGG	2 cut(s)	285, 326
HgaI	GACGC	2 cut(s)	118, 213
HhaI	GCGC	3 cut(s)	43, 59, 447
Hin1I	GRCGYC	3 cut(s)	110, 224, 445
Hin1II	CATG	2 cut(s)	277, 403
Hin6I	GCGC	3 cut(s)	41, 57, 445
HinP1I	GCGC	3 cut(s)	41, 57, 445
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	2 cut(s)	285, 326
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	6 cut(s)	49, 51, 65, 67, 106, 129
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	264, 417
HpyF10VI	GCNNNNNNNGC	3 cut(s)	270, 279, 453
HpyF3I	CTNAG	1 cut(s)	256
Hsp92I	GRCGYC	3 cut(s)	110, 224, 445
Hsp92II	CATG	2 cut(s)	277, 403
HspAI	GCGC	3 cut(s)	41, 57, 445
KasI	GGCGCC	1 cut(s)	444
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	177, 252, 396
LpnPI	CCDG	7 cut(s)	160, 189, 224, 263, 298, 339, 414
Lsp1109I	GCAGC	4 cut(s)	30, 46, 75, 197
LweI	GCATC	2 cut(s)	283, 426
MaeI	CTAG	2 cut(s)	12, 380
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	3 cut(s)	179, 254, 398
MboI	GATC	3 cut(s)	177, 252, 396
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	2 cut(s)	177, 252
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	1 cut(s)	143
Mly113I	GGCGCC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	8 cut(s)	26, 47, 63, 136, 176, 191, 322, 397
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	2 cut(s)	285, 326
MspR9I	CCNGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	270, 279, 453
NarI	GGCGCC	1 cut(s)	445
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	3 cut(s)	177, 252, 396
NlaIII	CATG	2 cut(s)	277, 403
NlaIV	GGNNCC	4 cut(s)	179, 281, 289, 446
NspI	RCATGY	1 cut(s)	277
PaeI	GCATGC	1 cut(s)	277
PaeR7I	CTCGAG	2 cut(s)	49, 65
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	7 cut(s)	45, 61, 87, 90, 212, 245, 248
PluTI	GGCGCC	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	428
PspN4I	GGNNCC	4 cut(s)	179, 281, 289, 446
PspPI	GGNCC	2 cut(s)	287, 320
PstNI	CAGNNNCTG	1 cut(s)	88
PsuI	RGATCY	2 cut(s)	177, 252
SatI	GCNGC	7 cut(s)	44, 60, 86, 89, 211, 244, 247
Sau3AI	GATC	3 cut(s)	177, 252, 396
Sau96I	GGNCC	2 cut(s)	287, 320
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	1 cut(s)	333
SfaNI	GCATC	2 cut(s)	283, 426
SfoI	GGCGCC	1 cut(s)	446
Sfr274I	CTCGAG	2 cut(s)	49, 65
SinI	GGWCC	1 cut(s)	287
SlaI	CTCGAG	2 cut(s)	49, 65
SmlI	CTYRAG	3 cut(s)	49, 65, 104
SmoI	CTYRAG	3 cut(s)	49, 65, 104
SphI	GCATGC	1 cut(s)	277
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	5 cut(s)	85, 213, 243, 246, 277
SspDI	GGCGCC	1 cut(s)	444
SspMI	CTAG	2 cut(s)	12, 380
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	267
TaqI	TCGA	4 cut(s)	50, 66, 130, 342
TasI	AATT	1 cut(s)	143
TauI	GCSGC	3 cut(s)	88, 246, 249
TfiI	GAWTC	1 cut(s)	344
TseI	GCWGC	4 cut(s)	43, 59, 88, 210
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	277
XhoI	CTCGAG	2 cut(s)	49, 65
XspI	CTAG	2 cut(s)	12, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.