RLG00000012874

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004886
Physical Location & Seq
Forward (+)
23406948 .. 23408338
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012874

Sequence Viewer

Length: 405 bp
ATGGTGGTTGTCGGTACAACGTCTAGGTTCTTAGCCTTCATCAACTCCTTATGCTTCATTGGCTCTGGTTGGTTTTGTGGCGTCTCGTTGATAGCACTAGATGTTTTCGACGGTGTTGACCAGGTACTTGACCCGGAAGGCGATTACGTAGATGCAGATGGAGGAGTCAGAGGACTTGGAATTGGAATCGGAATCAGAAGAAAGAGAGAGGGAGTGGATGATGGCGTGGTGGATGGAGGAAAGACTGCGGAAGGAGTGCTTCATGAAAACAATAGAGTCAGCGGAGTAGATGAGGTCTGTCGCCAACCCAAACTCGAAGTCGCCATCACCGTCGCGAGTTCAAGGGTCGAGTCCATTCACTATAGCGGGGAAGAGCAGAAGCAAAGTGGTGAGGATCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.19

Weight (kDa)

4.49

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 335
AciI CCGC 3 cut(s) 248, 282, 366
AclWI GGATC 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 2 cut(s) 16, 126
AgsI TTSAA 1 cut(s) 342
AjnI CCWGG 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 1 cut(s) 402
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 319, 401
BccI CCATC 4 cut(s) 152, 215, 227, 332
BciT130I CCWGG 1 cut(s) 122
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 24, 98
BfmI CTRYAG 1 cut(s) 361
Bme1390I CCNGG 2 cut(s) 122, 134
BmrFI CCNGG 2 cut(s) 122, 134
BmsI GCATC 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 81
BseBI CCWGG 1 cut(s) 122
BseGI GGATG 2 cut(s) 223, 238
BseRI GAGGAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 335
BsiSI CCGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 88
BsmBI CGTCTC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 394
Bsp68I TCGCGA 1 cut(s) 335
BspACI CCGC 3 cut(s) 248, 282, 366
BspFNI CGCG 1 cut(s) 335
BspHI TCATGA 1 cut(s) 262
BspPI GGATC 1 cut(s) 402
BspQI GCTCTTC 1 cut(s) 366
BssMI GATC 1 cut(s) 394
BssNI GRCGYC 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 113, 331
Bst6I CTCTTC 1 cut(s) 366
BstACI GRCGYC 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 223, 238
BstFNI CGCG 1 cut(s) 335
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 2 cut(s) 120, 132
BstSFI CTRYAG 1 cut(s) 361
BstSNI TACGTA 1 cut(s) 148
BstUI CGCG 1 cut(s) 335
BtsCI GGATG 2 cut(s) 223, 238
BtuMI TCGCGA 1 cut(s) 335
CciI TCATGA 1 cut(s) 262
CseI GACGC 1 cut(s) 70
CsiI ACCWGGT 1 cut(s) 120
Csp6I GTAC 2 cut(s) 15, 125
CviAII CATG 1 cut(s) 263
CviJI RGCY 3 cut(s) 35, 63, 402
CviKI_1 RGCY 3 cut(s) 35, 63, 402
CviQI GTAC 2 cut(s) 15, 125
DdeI CTNAG 1 cut(s) 31
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco105I TACGTA 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 1 cut(s) 266
FaiI YATR 3 cut(s) 52, 264, 363
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 1 cut(s) 262
FauI CCCGC 1 cut(s) 359
FokI GGATG 2 cut(s) 230, 245
FspBI CTAG 2 cut(s) 24, 98
HapII CCGG 1 cut(s) 134
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 266
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 5 cut(s) 165, 186, 192, 276, 350
HpaII CCGG 1 cut(s) 134
HphI GGTGA 2 cut(s) 319, 401
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 3 cut(s) 170, 191, 197
Hpy188III TCNNGA 2 cut(s) 263, 334
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 2 cut(s) 113, 335
HpyAV CCTTC 3 cut(s) 46, 131, 245
HpyCH4III ACNGT 2 cut(s) 113, 331
HpyCH4IV ACGT 2 cut(s) 20, 147
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 2 cut(s) 20, 147
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 1 cut(s) 394
LguI GCTCTTC 1 cut(s) 366
LpnPI CCDG 4 cut(s) 51, 107, 134, 147
LweI GCATC 1 cut(s) 142
MabI ACCWGGT 1 cut(s) 120
MaeI CTAG 2 cut(s) 24, 98
MaeII ACGT 2 cut(s) 20, 147
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 2 cut(s) 210, 383
MluCI AATT 1 cut(s) 180
MlyI GAGTC 3 cut(s) 174, 285, 359
MnlI CCTC 6 cut(s) 155, 164, 202, 230, 286, 385
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 122, 134
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 134
NdeII GATC 1 cut(s) 394
NlaIII CATG 1 cut(s) 266
NruI TCGCGA 1 cut(s) 335
PagI TCATGA 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PfeI GAWTC 2 cut(s) 186, 192
PleI GAGTC 3 cut(s) 173, 284, 358
PpsI GAGTC 3 cut(s) 173, 284, 358
Ppu21I YACGTR 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
RruI TCGCGA 1 cut(s) 335
RsaI GTAC 2 cut(s) 16, 126
RsaNI GTAC 2 cut(s) 15, 125
SapI GCTCTTC 1 cut(s) 366
Sau3AI GATC 1 cut(s) 394
SchI GAGTC 3 cut(s) 174, 285, 359
ScrFI CCNGG 2 cut(s) 122, 134
SetI ASST 5 cut(s) 23, 29, 126, 150, 297
SexAI ACCWGGT 1 cut(s) 120
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 361
SnaBI TACGTA 1 cut(s) 148
Sse9I AATT 1 cut(s) 180
SsiI CCGC 3 cut(s) 248, 282, 366
SspMI CTAG 2 cut(s) 24, 98
StyD4I CCNGG 2 cut(s) 120, 132
TaaI ACNGT 2 cut(s) 113, 331
TaiI ACGT 2 cut(s) 23, 150
TaqI TCGA 3 cut(s) 108, 315, 348
TasI AATT 1 cut(s) 180
TfiI GAWTC 2 cut(s) 186, 192
TspDTI ATGAA 4 cut(s) 28, 46, 251, 279
XspI CTAG 2 cut(s) 24, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.