Rh7AG256800

Flocculation protein FLO11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004886
Physical Location & Seq
Forward (+)
26062917 .. 26070625
7709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG256800.1

Sequence Viewer

Length: 540 bp
ATGAAGGTTGAGTTACTAGACGGCAAAGCCAATAGCAAGACTAGAATAAGCTTCAGTACTAAATTCAGGGAAGCGTCAAAGAAACTCATAAGCTATCGAATCAAAGTTGTTGGTTTTAAACCTTACTCGCATAGAATTGCACTTGAGAGAGGACACGTTTCTGATCTTGATTTATATGTTGCCATCGCCGCCGTGAGTTCGAGGGTCCCATCAGTTCATGGTGGTGAGGAAGAACAGAAGCAAAGCGGTGAGGATCGAGGCGGTTCCGGTACTGAAATAGAAAGAAGCTTTGGGAAGGTGGTCAATGCCAGCGACAGAGACGAAGAGCTCACTCTGTTTCTCGAGATGCGGCGGCGCGACAAAGACAAGGAGAAAACTGGAACTTTCTGCTACTTCCAAGCAAGAACCGCGTTGAGCTCGATGCTGCTCCTCCGCTTGCTACGACGGCGTTTTGGGTTGTTAAAAGCTTCAGTCTTTTGTTACTCCCAGTTAGATTTTTTTGGTGTTGATTTTGATGATGGTTTTGTGCACAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.34

Weight (kDa)

9.22

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 357, 410
AciI CCGC 7 cut(s) 189, 246, 261, 349, 352, 408, 433
AclWI GGATC 1 cut(s) 261
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 2 cut(s) 37, 453
AfaI GTAC 2 cut(s) 58, 271
AflIII ACRYGT 1 cut(s) 154
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 6 cut(s) 51, 93, 288, 328, 417, 467
AluI AGCT 6 cut(s) 51, 93, 288, 328, 417, 467
Alw21I GWGCWC 3 cut(s) 330, 419, 531
Alw26I GTCTC 1 cut(s) 312
Alw44I GTGCAC 1 cut(s) 527
AlwI GGATC 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 341
ApaLI GTGCAC 1 cut(s) 527
ApeKI GCWGC 1 cut(s) 424
ApoI RAATTY 1 cut(s) 62
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 236, 260
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 531
BanII GRGCYC 2 cut(s) 330, 419
Bbv12I GWGCWC 3 cut(s) 330, 419, 531
BbvI GCAGC 1 cut(s) 411
BccI CCATC 3 cut(s) 191, 217, 512
BceAI ACGGC 3 cut(s) 37, 176, 461
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 2 cut(s) 17, 42
BisI GCNGC 4 cut(s) 189, 350, 353, 425
BlsI GCNGC 4 cut(s) 190, 351, 354, 426
BmcAI AGTACT 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 3 cut(s) 206, 207, 265
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 2 cut(s) 336, 411
BmuI ACTGGG 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 266
Bse1I ACTGG 2 cut(s) 382, 487
BseNI ACTGG 2 cut(s) 382, 487
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 531
BseXI GCAGC 1 cut(s) 411
Bsh1236I CGCG 2 cut(s) 357, 410
BsiHKAI GWGCWC 3 cut(s) 330, 419, 531
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 312
BsmBI CGTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 3 cut(s) 330, 419, 531
Bsp143I GATC 2 cut(s) 163, 253
BspACI CCGC 7 cut(s) 189, 246, 261, 349, 352, 408, 433
BspFNI CGCG 2 cut(s) 357, 410
BspLI GGNNCC 3 cut(s) 206, 207, 265
BspPI GGATC 1 cut(s) 261
BspQI GCTCTTC 1 cut(s) 318
BsrI ACTGG 2 cut(s) 382, 487
BssMI GATC 2 cut(s) 163, 253
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 310, 437
BstFNI CGCG 2 cut(s) 357, 410
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 2 cut(s) 166, 256
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 2 cut(s) 163, 253
BstMWI GCNNNNNNNGC 3 cut(s) 188, 407, 445
BstSLI GKGCMC 1 cut(s) 531
BstUI CGCG 2 cut(s) 357, 410
BstV1I GCAGC 1 cut(s) 411
BtgZI GCGATG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 538
Cac8I GCNNGC 2 cut(s) 310, 437
CfoI GCGC 1 cut(s) 357
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 57, 270
CviAII CATG 1 cut(s) 218
CviJI RGCY 7 cut(s) 29, 51, 93, 288, 328, 417, 467
CviKI_1 RGCY 7 cut(s) 29, 51, 93, 288, 328, 417, 467
CviQI GTAC 2 cut(s) 57, 270
DpnI GATC 2 cut(s) 165, 255
DpnII GATC 2 cut(s) 163, 253
DraI TTTAAA 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Ecl136II GAGCTC 2 cut(s) 328, 417
Eco24I GRGCYC 2 cut(s) 330, 419
Eco47I GGWCC 1 cut(s) 205
Eco53kI GAGCTC 2 cut(s) 328, 417
Eco57I CTGAAG 2 cut(s) 37, 453
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 2 cut(s) 328, 417
EcoO109I RGGNCCY 1 cut(s) 205
EcoT38I GRGCYC 2 cut(s) 330, 419
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 1 cut(s) 221
FaiI YATR 5 cut(s) 89, 132, 175, 177, 219
FaqI GGGAC 1 cut(s) 191
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 4 cut(s) 189, 350, 353, 425
FriOI GRGCYC 2 cut(s) 330, 419
Fsp4HI GCNGC 4 cut(s) 189, 350, 353, 425
FspBI CTAG 2 cut(s) 17, 42
GlaI GCGC 1 cut(s) 356
GluI GCNGC 4 cut(s) 189, 350, 353, 425
HapII CCGG 1 cut(s) 267
HgaI GACGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 357
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HindIII AAGCTT 3 cut(s) 49, 286, 465
HinfI GANTC 1 cut(s) 99
HpaII CCGG 1 cut(s) 267
HphI GGTGA 2 cut(s) 236, 260
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 3 cut(s) 167, 341, 343
Hpy8I GTNNAC 1 cut(s) 529
Hpy99I CGWCG 1 cut(s) 447
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 140, 529
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 407, 445
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 1 cut(s) 355
KflI GGGWCCC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 163, 253
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 432
LpnPI CCDG 5 cut(s) 52, 280, 322, 363, 500
Lsp1109I GCAGC 1 cut(s) 411
LweI GCATC 2 cut(s) 336, 411
MaeI CTAG 2 cut(s) 17, 42
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 12, 479
MalI GATC 2 cut(s) 165, 255
MboI GATC 2 cut(s) 163, 253
MboII GAAGA 2 cut(s) 242, 335
MhlI GDGCHC 3 cut(s) 330, 419, 531
MluCI AATT 2 cut(s) 62, 135
MnlI CCTC 6 cut(s) 143, 195, 220, 244, 251, 440
MseI TTAA 2 cut(s) 117, 461
MslI CAYNNNNRTG 1 cut(s) 222
MspI CCGG 1 cut(s) 267
MvnI CGCG 2 cut(s) 357, 410
MwoI GCNNNNNNNGC 3 cut(s) 188, 407, 445
NdeII GATC 2 cut(s) 163, 253
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 3 cut(s) 206, 207, 265
PaeR7I CTCGAG 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 4 cut(s) 190, 351, 354, 426
PpuMI RGGWCCY 1 cut(s) 205
Psp124BI GAGCTC 2 cut(s) 330, 419
Psp5II RGGWCCY 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 206, 207, 265
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
RsaI GTAC 2 cut(s) 58, 271
RsaNI GTAC 2 cut(s) 57, 270
RseI CAYNNNNRTG 1 cut(s) 222
SacI GAGCTC 2 cut(s) 330, 419
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 2 cut(s) 117, 461
SatI GCNGC 4 cut(s) 189, 350, 353, 425
Sau3AI GATC 2 cut(s) 163, 253
Sau96I GGNCC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 58
SduI GDGCHC 3 cut(s) 330, 419, 531
SfaNI GCATC 2 cut(s) 336, 411
Sfr274I CTCGAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 2 cut(s) 143, 341
SmoI CTYRAG 2 cut(s) 143, 341
Sse9I AATT 2 cut(s) 62, 135
SsiI CCGC 7 cut(s) 189, 246, 261, 349, 352, 408, 433
SspMI CTAG 2 cut(s) 17, 42
SstI GAGCTC 2 cut(s) 330, 419
TaaI ACNGT 1 cut(s) 533
TaiI ACGT 1 cut(s) 159
TaqI TCGA 5 cut(s) 97, 200, 256, 342, 419
TasI AATT 2 cut(s) 62, 135
TatI WGTACW 1 cut(s) 56
TauI GCSGC 3 cut(s) 191, 352, 355
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 2 cut(s) 117, 461
Tru9I TTAA 2 cut(s) 117, 461
TscAI CASTG 1 cut(s) 538
TseI GCWGC 1 cut(s) 424
TspDTI ATGAA 2 cut(s) 17, 206
TspRI CASTG 1 cut(s) 538
VneI GTGCAC 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 62
XhoI CTCGAG 1 cut(s) 341
XspI CTAG 2 cut(s) 17, 42
ZrmI AGTACT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.