Rh7CG432000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004886
Physical Location & Seq
Forward (+)
56501430 .. 56526195
24766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG432000.1

Sequence Viewer

Length: 1329 bp
ATGGGCACTGGAAGACCTGGTTGGCATATCGAGTGCAGTGCCATGAGTACTACTTATCTGGGTTACTCTTTTGACATACATGGTGGAGGGATGGACCTTCTGTTTCCCCCACATGAGAATGAAATTGCTCAGAGTTGTGCTGCTTGTAAACAAAGTTATATAAGCTACTGGATACACAATGGTTTTGTCACTATAGACTCTGAAAAAATGTTCAAATCGCTATGGAACTTCTTTACAATTCGACAGAACATTGATAAATTCCCTCTGGTGAAATATCCTGTGCTGGTAATACATAAACCTTATTGCTTCATATATTCTGCATCTTATCTGCACAAGCAAAGGCTCTTTGTGGTGGTTGGTGGAGGAGCTGGTGCTCGACATTACCTACCTTGTGCTCGTGCTGCAATAAAATACGTCATTCTGGCTATATCTGGTCATATGGATGATATCCTGGGAAAGTATAAGGAACTTAAACACAGGATACTGTTTCTTTTAGAGATGCTAGAGCCATTCCTTGATCTCGCTGTAGGCAGATTCAAGGGTAAAATAGCCTTTGGAGATCTATCTTGTGCATATCCAGAAACGCAGGAACGGAATTGTGCTATTGCTATTAATGTGATCCGTACAGCAGTTCTTCCTTCACTAGAATCTGAATGGAGGTGTGGATCAGTTGCTCCTAGGGTTTTCCAATACCGAATTCCGACTCTGTTGGTCTCAATGTTTGCCACCTTCGCCTCAATCTACGTCGCCGGACGGTTGTGGCAGGATTCGGAGAACAAGGTTTATTTGATTAAAGAGCTTGATAGGATTACTGGGCAGAGTCCTAATCCTGAGCAGCAATTTGATACTGTGGAAATGTTATATGATGAGCTGTTTGGCAATGATGATGATCAGATGGTTGCTCATGATCAGGAATATGAGACTCAGCATTTGATGTTAGAGGGTACTACTGATGACCACATTGACTATGCATTGGAGGTTTCTGATCTTGATTTATATGTTGCCATCGCCGCCGTGAGTTCGAGGGTCCCATCAGTTCACGGTGGTGAGGAAGAACAGAAGCAAAGCGAAAGAAGCTTTGGGAAGGTGGTCAATGCCAGCGACAGAGACGAAGAGCTCACTCTGTTTCTCGAGATGCGGCGGCGCGACAAAGACAAGGAGAAAACTGGAACTTTCTGCTACTTCCAAGCAAGAACCGCGTCGAGCTCGATGCTGCTCCTCCGCTTGCTACGACGGCGTTTTGGGTTGTTAAAAGCTTCAGTCTTTTGTTACTCCCAGTTAGATTTTTTTGGTGATGATTTTGATGATGGTTTTGTGCACAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

442

Amino Acids

50.47

Weight (kDa)

5.58

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 2 - 89 1.4e-39 tRNA synthetases class I (C) catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 1146, 1199
AciI CCGC 5 cut(s) 1011, 1138, 1141, 1197, 1222
AclWI GGATC 2 cut(s) 613, 673
AcsI RAATTY 2 cut(s) 257, 696
AcuI CTGAAG 1 cut(s) 1242
AfaI GTAC 3 cut(s) 49, 625, 946
AgsI TTSAA 2 cut(s) 214, 538
AjnI CCWGG 2 cut(s) 16, 450
AjuI GAANNNNNNNTTGG 5 cut(s) 36, 681, 713, 1062, 1094
AleI CACNNNNGTG 1 cut(s) 1044
AluBI AGCT 8 cut(s) 165, 368, 799, 871, 1077, 1117, 1206, 1256
AluI AGCT 8 cut(s) 165, 368, 799, 871, 1077, 1117, 1206, 1256
Alw21I GWGCWC 5 cut(s) 376, 397, 1119, 1208, 1320
Alw26I GTCTC 3 cut(s) 718, 914, 1101
Alw44I GTGCAC 1 cut(s) 1316
AlwI GGATC 2 cut(s) 613, 673
Ama87I CYCGRG 1 cut(s) 1130
ApaLI GTGCAC 1 cut(s) 1316
ApeKI GCWGC 4 cut(s) 140, 401, 835, 1213
ApoI RAATTY 2 cut(s) 257, 696
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
AseI ATTAAT 1 cut(s) 612
AspA2I CCTAGG 1 cut(s) 677
AspLEI GCGC 1 cut(s) 1146
AspS9I GGNCC 2 cut(s) 94, 1027
AsuHPI GGTGA 3 cut(s) 280, 1058, 1304
AvaI CYCGRG 1 cut(s) 1130
AvaII GGWCC 2 cut(s) 94, 1027
AvrII CCTAGG 1 cut(s) 677
BaeGI GKGCMC 2 cut(s) 8, 1320
BanII GRGCYC 2 cut(s) 1119, 1208
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 19
Bbv12I GWGCWC 5 cut(s) 376, 397, 1119, 1208, 1320
BbvI GCAGC 4 cut(s) 127, 388, 847, 1200
BccI CCATC 5 cut(s) 85, 889, 1013, 1039, 1301
BceAI ACGGC 2 cut(s) 998, 1250
BcgI CGANNNNNNTGC 4 cut(s) 20, 54, 1192, 1226
BciT130I CCWGG 2 cut(s) 18, 452
BciVI GTATCC 2 cut(s) 165, 474
BclI TGATCA 2 cut(s) 889, 907
BcoDI GTCTC 3 cut(s) 718, 914, 1101
BfaI CTAG 3 cut(s) 503, 644, 678
BfmI CTRYAG 2 cut(s) 192, 525
BfuI GTATCC 2 cut(s) 165, 474
BglII AGATCT 1 cut(s) 559
BisI GCNGC 7 cut(s) 141, 402, 836, 1011, 1139, 1142, 1214
BlnI CCTAGG 1 cut(s) 677
BlsI GCNGC 7 cut(s) 142, 403, 837, 1012, 1140, 1143, 1215
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 18, 452
Bme18I GGWCC 2 cut(s) 94, 1027
BmeT110I CYCGRG 1 cut(s) 1130
BmgT120I GGNCC 2 cut(s) 94, 1027
BmiI GGNNCC 2 cut(s) 1028, 1029
BmrFI CCNGG 2 cut(s) 18, 452
BmrI ACTGGG 2 cut(s) 822, 1270
BmsI GCATC 4 cut(s) 329, 489, 1125, 1200
BmuI ACTGGG 2 cut(s) 822, 1270
BpiI GAAGAC 1 cut(s) 19
Bpu10I CCTNAGC 1 cut(s) 831
BsaBI GATNNNNATC 1 cut(s) 888
BsaI GGTCTC 1 cut(s) 718
BsaJI CCNNGG 2 cut(s) 451, 677
Bse1I ACTGG 5 cut(s) 13, 173, 817, 1171, 1276
Bse3DI GCAATG 1 cut(s) 886
Bse8I GATNNNNATC 1 cut(s) 888
BseBI CCWGG 2 cut(s) 18, 452
BseDI CCNNGG 2 cut(s) 451, 677
BseGI GGATG 2 cut(s) 96, 448
BseJI GATNNNNATC 1 cut(s) 888
BseMI GCAATG 1 cut(s) 886
BseMII CTCAG 3 cut(s) 143, 822, 938
BseNI ACTGG 5 cut(s) 13, 173, 817, 1171, 1276
BseRI GAGGAG 2 cut(s) 378, 1208
BseSI GKGCMC 2 cut(s) 8, 1320
BseXI GCAGC 4 cut(s) 127, 388, 847, 1200
BsgI GTGCAG 2 cut(s) 55, 314
Bsh1236I CGCG 2 cut(s) 1146, 1199
BsiHKAI GWGCWC 5 cut(s) 376, 397, 1119, 1208, 1320
BsiHKCI CYCGRG 1 cut(s) 1130
BsiSI CCGG 1 cut(s) 750
BslFI GGGAC 1 cut(s) 1013
BsmAI GTCTC 3 cut(s) 718, 914, 1101
BsmBI CGTCTC 1 cut(s) 1101
BsmFI GGGAC 1 cut(s) 1013
Bso31I GGTCTC 1 cut(s) 718
BsoBI CYCGRG 1 cut(s) 1130
Bsp1286I GDGCHC 6 cut(s) 8, 376, 397, 1119, 1208, 1320
Bsp143I GATC 7 cut(s) 517, 559, 618, 665, 889, 907, 985
BspACI CCGC 5 cut(s) 1011, 1138, 1141, 1197, 1222
BspCNI CTCAG 3 cut(s) 142, 823, 937
BspFNI CGCG 2 cut(s) 1146, 1199
BspHI TCATGA 1 cut(s) 904
BspLI GGNNCC 2 cut(s) 1028, 1029
BspPI GGATC 2 cut(s) 613, 673
BspQI GCTCTTC 1 cut(s) 1107
BspTNI GGTCTC 1 cut(s) 718
BsrDI GCAATG 1 cut(s) 886
BsrI ACTGG 5 cut(s) 13, 173, 817, 1171, 1276
BssECI CCNNGG 2 cut(s) 451, 677
BssMI GATC 7 cut(s) 517, 559, 618, 665, 889, 907, 985
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 677
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 18, 452
Bst4CI ACNGT 5 cut(s) 486, 756, 850, 1043, 1322
Bst6I CTCTTC 1 cut(s) 1107
BstC8I GCNNGC 2 cut(s) 1099, 1226
BstDEI CTNAG 3 cut(s) 129, 831, 924
BstF5I GGATG 2 cut(s) 96, 448
BstFNI CGCG 2 cut(s) 1146, 1199
BstHHI GCGC 1 cut(s) 1146
BstKTI GATC 7 cut(s) 520, 562, 621, 668, 892, 910, 988
BstMAI GTCTC 3 cut(s) 718, 914, 1101
BstMBI GATC 7 cut(s) 517, 559, 618, 665, 889, 907, 985
BstMWI GCNNNNNNNGC 6 cut(s) 401, 731, 1010, 1074, 1196, 1234
BstNI CCWGG 2 cut(s) 18, 452
BstSCI CCNGG 2 cut(s) 16, 450
BstSFI CTRYAG 2 cut(s) 192, 525
BstSLI GKGCMC 2 cut(s) 8, 1320
BstUI CGCG 2 cut(s) 1146, 1199
BstV1I GCAGC 4 cut(s) 127, 388, 847, 1200
BstV2I GAAGAC 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BsuI GTATCC 2 cut(s) 165, 474
BtgZI GCGATG 1 cut(s) 991
BtsCI GGATG 2 cut(s) 96, 448
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 3 cut(s) 6, 43, 1327
Cac8I GCNNGC 2 cut(s) 1099, 1226
CciI TCATGA 1 cut(s) 904
CfoI GCGC 1 cut(s) 1146
Cfr13I GGNCC 2 cut(s) 94, 1027
CseI GACGC 1 cut(s) 1188
CsiI ACCWGGT 1 cut(s) 16
Csp6I GTAC 3 cut(s) 48, 624, 945
CviAII CATG 4 cut(s) 43, 80, 113, 905
CviQI GTAC 3 cut(s) 48, 624, 945
DdeI CTNAG 3 cut(s) 129, 831, 924
DpnI GATC 7 cut(s) 519, 561, 620, 667, 891, 909, 987
DpnII GATC 7 cut(s) 517, 559, 618, 665, 889, 907, 985
Eam1104I CTCTTC 1 cut(s) 1107
EarI CTCTTC 1 cut(s) 1107
Ecl136II GAGCTC 2 cut(s) 1117, 1206
Eco130I CCWWGG 1 cut(s) 677
Eco24I GRGCYC 2 cut(s) 1119, 1208
Eco31I GGTCTC 1 cut(s) 718
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 94, 1027
Eco53kI GAGCTC 2 cut(s) 1117, 1206
Eco57I CTGAAG 1 cut(s) 1242
Eco88I CYCGRG 1 cut(s) 1130
EcoICRI GAGCTC 2 cut(s) 1117, 1206
EcoO109I RGGNCCY 1 cut(s) 1027
EcoRI GAATTC 1 cut(s) 696
EcoRII CCWGG 2 cut(s) 16, 450
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 677
EcoT22I ATGCAT 1 cut(s) 973
EcoT38I GRGCYC 2 cut(s) 1119, 1208
ErhI CCWWGG 1 cut(s) 677
Esp3I CGTCTC 1 cut(s) 1101
FaeI CATG 4 cut(s) 46, 83, 116, 908
FaqI GGGAC 1 cut(s) 1013
FatI CATG 4 cut(s) 42, 79, 112, 904
FauNDI CATATG 1 cut(s) 438
FbaI TGATCA 2 cut(s) 889, 907
Fnu4HI GCNGC 7 cut(s) 141, 402, 836, 1011, 1139, 1142, 1214
FokI GGATG 2 cut(s) 103, 455
FriOI GRGCYC 2 cut(s) 1119, 1208
Fsp4HI GCNGC 7 cut(s) 141, 402, 836, 1011, 1139, 1142, 1214
FspBI CTAG 3 cut(s) 503, 644, 678
GlaI GCGC 1 cut(s) 1145
GluI GCNGC 7 cut(s) 141, 402, 836, 1011, 1139, 1142, 1214
HapII CCGG 1 cut(s) 750
HgaI GACGC 1 cut(s) 1188
HhaI GCGC 1 cut(s) 1146
Hin1II CATG 4 cut(s) 46, 83, 116, 908
Hin6I GCGC 1 cut(s) 1144
HinP1I GCGC 1 cut(s) 1144
HindIII AAGCTT 2 cut(s) 1075, 1254
HinfI GANTC 7 cut(s) 197, 534, 647, 703, 767, 820, 922
HpaII CCGG 1 cut(s) 750
HphI GGTGA 3 cut(s) 280, 1058, 1304
Hpy166II GTNNAC 3 cut(s) 149, 1039, 1318
Hpy188I TCNGA 7 cut(s) 132, 202, 652, 702, 772, 894, 985
Hpy188III TCNNGA 7 cut(s) 578, 830, 905, 911, 989, 1130, 1132
Hpy8I GTNNAC 3 cut(s) 149, 1039, 1318
Hpy99I CGWCG 3 cut(s) 749, 1204, 1236
HpyAV CCTTC 4 cut(s) 107, 648, 739, 1078
HpyCH4III ACNGT 5 cut(s) 486, 756, 850, 1043, 1322
HpyCH4IV ACGT 2 cut(s) 414, 744
HpyCH4V TGCA 7 cut(s) 36, 320, 331, 404, 572, 971, 1318
HpyF10VI GCNNNNNNNGC 6 cut(s) 401, 731, 1010, 1074, 1196, 1234
HpyF3I CTNAG 3 cut(s) 129, 831, 924
HpySE526I ACGT 2 cut(s) 414, 744
Hsp92II CATG 4 cut(s) 46, 83, 116, 908
HspAI GCGC 1 cut(s) 1144
KflI GGGWCCC 1 cut(s) 1027
Ksp22I TGATCA 2 cut(s) 889, 907
Kzo9I GATC 7 cut(s) 517, 559, 618, 665, 889, 907, 985
LguI GCTCTTC 1 cut(s) 1107
LmnI GCTCC 3 cut(s) 365, 679, 1221
Lsp1109I GCAGC 4 cut(s) 127, 388, 847, 1200
LweI GCATC 4 cut(s) 329, 489, 1125, 1200
MabI ACCWGGT 1 cut(s) 16
MaeI CTAG 3 cut(s) 503, 644, 678
MaeII ACGT 2 cut(s) 414, 744
MaeIII GTNAC 3 cut(s) 62, 187, 1268
MalI GATC 7 cut(s) 519, 561, 620, 667, 891, 909, 987
MboI GATC 7 cut(s) 517, 559, 618, 665, 889, 907, 985
MboII GAAGA 4 cut(s) 24, 626, 1064, 1124
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 6 cut(s) 8, 376, 397, 1119, 1208, 1320
MluCI AATT 6 cut(s) 123, 237, 257, 595, 696, 839
MlyI GAGTC 4 cut(s) 191, 697, 829, 916
MmeI TCCRAC 1 cut(s) 725
Mph1103I ATGCAT 1 cut(s) 973
MseI TTAA 4 cut(s) 471, 612, 792, 1250
MslI CAYNNNNRTG 3 cut(s) 117, 441, 1044
MspI CCGG 1 cut(s) 750
MspR9I CCNGG 2 cut(s) 18, 452
MvaI CCWGG 2 cut(s) 18, 452
MvnI CGCG 2 cut(s) 1146, 1199
MwoI GCNNNNNNNGC 6 cut(s) 401, 731, 1010, 1074, 1196, 1234
NdeI CATATG 1 cut(s) 438
NdeII GATC 7 cut(s) 517, 559, 618, 665, 889, 907, 985
NlaIII CATG 4 cut(s) 46, 83, 116, 908
NlaIV GGNNCC 2 cut(s) 1028, 1029
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 973
OliI CACNNNNGTG 1 cut(s) 1044
PaeR7I CTCGAG 1 cut(s) 1130
PagI TCATGA 1 cut(s) 904
PciSI GCTCTTC 1 cut(s) 1107
PfeI GAWTC 3 cut(s) 534, 647, 767
PkrI GCNGC 7 cut(s) 142, 403, 837, 1012, 1140, 1143, 1215
PleI GAGTC 4 cut(s) 191, 697, 828, 916
PpsI GAGTC 4 cut(s) 191, 697, 828, 916
PpuMI RGGWCCY 1 cut(s) 1027
PshBI ATTAAT 1 cut(s) 612
Psp124BI GAGCTC 2 cut(s) 1119, 1208
Psp5II RGGWCCY 1 cut(s) 1027
Psp6I CCWGG 2 cut(s) 16, 450
PspGI CCWGG 2 cut(s) 16, 450
PspN4I GGNNCC 2 cut(s) 1028, 1029
PspPI GGNCC 2 cut(s) 94, 1027
PspPPI RGGWCCY 1 cut(s) 1027
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 3 cut(s) 49, 625, 946
RsaNI GTAC 3 cut(s) 48, 624, 945
RseI CAYNNNNRTG 3 cut(s) 117, 441, 1044
SacI GAGCTC 2 cut(s) 1119, 1208
SapI GCTCTTC 1 cut(s) 1107
SaqAI TTAA 4 cut(s) 471, 612, 792, 1250
SatI GCNGC 7 cut(s) 141, 402, 836, 1011, 1139, 1142, 1214
Sau3AI GATC 7 cut(s) 517, 559, 618, 665, 889, 907, 985
Sau96I GGNCC 2 cut(s) 94, 1027
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 4 cut(s) 191, 697, 829, 916
ScrFI CCNGG 2 cut(s) 18, 452
SduI GDGCHC 6 cut(s) 8, 376, 397, 1119, 1208, 1320
SexAI ACCWGGT 1 cut(s) 16
SfaNI GCATC 4 cut(s) 329, 489, 1125, 1200
SfcI CTRYAG 2 cut(s) 192, 525
Sfr274I CTCGAG 1 cut(s) 1130
SinI GGWCC 2 cut(s) 94, 1027
SlaI CTCGAG 1 cut(s) 1130
SmiMI CAYNNNNRTG 3 cut(s) 117, 441, 1044
SmlI CTYRAG 1 cut(s) 1130
SmoI CTYRAG 1 cut(s) 1130
Sse9I AATT 6 cut(s) 123, 237, 257, 595, 696, 839
SsiI CCGC 5 cut(s) 1011, 1138, 1141, 1197, 1222
SspMI CTAG 3 cut(s) 503, 644, 678
SstI GAGCTC 2 cut(s) 1119, 1208
StyD4I CCNGG 2 cut(s) 16, 450
StyI CCWWGG 1 cut(s) 677
TaaI ACNGT 5 cut(s) 486, 756, 850, 1043, 1322
TaiI ACGT 2 cut(s) 417, 747
TaqI TCGA 7 cut(s) 30, 241, 376, 1022, 1131, 1202, 1208
TasI AATT 6 cut(s) 123, 237, 257, 595, 696, 839
TatI WGTACW 1 cut(s) 47
TauI GCSGC 3 cut(s) 1013, 1141, 1144
TfiI GAWTC 3 cut(s) 534, 647, 767
Tru1I TTAA 4 cut(s) 471, 612, 792, 1250
Tru9I TTAA 4 cut(s) 471, 612, 792, 1250
TscAI CASTG 3 cut(s) 13, 43, 1327
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 4 cut(s) 140, 401, 835, 1213
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 135, 298
TspGWI ACGGA 2 cut(s) 607, 611
TspRI CASTG 3 cut(s) 13, 43, 1327
VneI GTGCAC 1 cut(s) 1316
VpaK11BI GGWCC 2 cut(s) 94, 1027
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 2 cut(s) 257, 696
XhoI CTCGAG 1 cut(s) 1130
XmaJI CCTAGG 1 cut(s) 677
XspI CTAG 3 cut(s) 503, 644, 678
ZrmI AGTACT 1 cut(s) 49
Zsp2I ATGCAT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.