Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001091.1

Orthogroup ID

OG0004886

Physical Location & Seq

Genomic Coordinates Forward (+)

58549 .. 61570

Gene Structure 3022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001091.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgggggctgagtccgagggccatcgccaacccaaacccgaggtcgccatcgccgccgcgagttcgagggtcaagtttgttcacggtggcggggaagagcaaaagcaaagcagtgaggatcgaggtggttccggtgtgaaattagcttaccggccttctgaaattcttgcacaccgaataattaagaagagccctcttctccttcctctccgcgtggcaaagacaaggagaaaagtgaaactttctactcctgagcaagaacggctgcgacgagctcgatgctgcttctccgcttgttacaaggatcttaaaactgcaactaagaacttctcaaataagattgggcaaggaggttttggctcagtttacttaggggttctaccagatggaactcgacttgctttgaagaagacagaagccaatattgattggaaaaagaaggagtttcaagctgaagttagcatcagtggcagtatccatcatctgcacttggccaggctccggggcttccgtgcaaagggtagcaatcgacttcttgcctatgagtacatggcaaatggatccctggacaaatggattttcaggaaaaaaatgaagagttcgtattggattaggagacaagattcaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr

Protein Analysis

210

Amino Acids

23.63

Weight (kDa)

10.33

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004886)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0282711
rosa_laevigata	RLG00000002958 RLG00000012874 RLG00000013624
rosa_multiflora	Rmu_sc0001091.1_g000013 Rmu_sc0004787.1_g000006 Rmu_sc0008470.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017920 Rroxscaffold_1G00028920 Rroxscaffold_4G00324080 Rroxscaffold_5G00350040 Rroxscaffold_5G00350720 Rroxscaffold_5G00360350 Rroxscaffold_7G00196920 Rroxscaffold_7G00213950
rosa_samantha	Rh2BG087300 Rh2CG089700 Rh4BG132200 Rh4CG168100 Rh4CG168200 Rh5AG480100 Rh5AG494000 Rh5DG440000 Rh6AG078500 Rh6AG237200 Rh7AG256800 Rh7BG004700 Rh7BG132400 Rh7BG321400 Rh7CG273300 Rh7CG432000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	59, 213
AciI	CCGC	5 cut(s)	54, 57, 90, 211, 291
AclWI	GGATC	4 cut(s)	126, 312, 555, 568
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	2 cut(s)	501, 517
AgsI	TTSAA	2 cut(s)	406, 449
AjnI	CCWGG	2 cut(s)	494, 564
AluBI	AGCT	3 cut(s)	146, 275, 452
AluI	AGCT	3 cut(s)	146, 275, 452
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	610
AlwI	GGATC	4 cut(s)	126, 312, 555, 568
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	3 cut(s)	19, 152, 492
ApeKI	GCWGC	2 cut(s)	265, 282
ApoI	RAATTY	1 cut(s)	162
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	618
AvaI	CYCGRG	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	560
BanII	GRGCYC	2 cut(s)	194, 277
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	252, 269
BccI	CCATC	4 cut(s)	30, 56, 380, 486
BceAI	ACGGC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BciT130I	CCWGG	2 cut(s)	496, 566
BciVI	GTATCC	1 cut(s)	485
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	610
BfuI	GTATCC	1 cut(s)	485
BisI	GCNGC	4 cut(s)	54, 57, 266, 283
BlsI	GCNGC	4 cut(s)	55, 58, 267, 284
Bme1390I	CCNGG	3 cut(s)	496, 503, 566
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	3 cut(s)	130, 500, 562
BmrFI	CCNGG	3 cut(s)	496, 503, 566
BmsI	GCATC	2 cut(s)	269, 471
BpiI	GAAGAC	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	503
BsaJI	CCNNGG	4 cut(s)	15, 39, 502, 564
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	2 cut(s)	501, 517
Bse118I	RCCGGY	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	496, 566
BseDI	CCNNGG	4 cut(s)	15, 39, 502, 564
BseLI	CCNNNNNNNGG	2 cut(s)	501, 517
BseMII	CTCAG	2 cut(s)	243, 375
BseXI	GCAGC	2 cut(s)	252, 269
BsgI	GTGCAG	1 cut(s)	470
Bsh1236I	CGCG	2 cut(s)	59, 213
BshFI	GGCC	3 cut(s)	21, 154, 494
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	132, 151, 502
BslI	CCNNNNNNNGG	2 cut(s)	501, 517
BsmAI	GTCTC	1 cut(s)	610
BsnI	GGCC	3 cut(s)	21, 154, 494
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	194, 277
Bsp143I	GATC	3 cut(s)	118, 304, 560
BspACI	CCGC	5 cut(s)	54, 57, 90, 211, 291
BspANI	GGCC	3 cut(s)	21, 154, 494
BspCNI	CTCAG	2 cut(s)	244, 374
BspFNI	CGCG	2 cut(s)	59, 213
BspLI	GGNNCC	3 cut(s)	130, 500, 562
BspPI	GGATC	4 cut(s)	126, 312, 555, 568
BspQI	GCTCTTC	2 cut(s)	90, 182
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	4 cut(s)	15, 39, 502, 564
BssMI	GATC	3 cut(s)	118, 304, 560
Bst2UI	CCWGG	2 cut(s)	496, 566
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	4 cut(s)	90, 182, 201, 590
BstDEI	CTNAG	5 cut(s)	9, 252, 321, 361, 370
BstFNI	CGCG	2 cut(s)	59, 213
BstKTI	GATC	3 cut(s)	121, 307, 563
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	3 cut(s)	118, 304, 560
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 262, 468
BstNI	CCWGG	2 cut(s)	496, 566
BstSCI	CCNGG	3 cut(s)	494, 501, 564
BstUI	CGCG	2 cut(s)	59, 213
BstV1I	GCAGC	2 cut(s)	252, 269
BstV2I	GAAGAC	1 cut(s)	416
BstX2I	RGATCY	2 cut(s)	304, 560
BstYI	RGATCY	2 cut(s)	304, 560
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	3 cut(s)	21, 154, 494
BtgZI	GCGATG	2 cut(s)	8, 34
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	118, 472
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	1 cut(s)	550
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	5 cut(s)	9, 252, 321, 361, 370
DpnI	GATC	3 cut(s)	120, 306, 562
DpnII	GATC	3 cut(s)	118, 304, 560
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	4 cut(s)	90, 182, 201, 590
EarI	CTCTTC	4 cut(s)	90, 182, 201, 590
Ecl136II	GAGCTC	1 cut(s)	275
Eco24I	GRGCYC	2 cut(s)	194, 277
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	494, 564
EcoT38I	GRGCYC	2 cut(s)	194, 277
FaeI	CATG	1 cut(s)	553
FaiI	YATR	3 cut(s)	543, 551, 631
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	1 cut(s)	549
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	4 cut(s)	54, 57, 266, 283
FriOI	GRGCYC	2 cut(s)	194, 277
Fsp4HI	GCNGC	4 cut(s)	54, 57, 266, 283
GluI	GCNGC	4 cut(s)	54, 57, 266, 283
HaeIII	GGCC	3 cut(s)	21, 154, 494
HapII	CCGG	3 cut(s)	132, 151, 502
Hin1II	CATG	1 cut(s)	553
HinfI	GANTC	2 cut(s)	11, 623
HpaII	CCGG	3 cut(s)	132, 151, 502
HphI	GGTGA	1 cut(s)	618
Hpy166II	GTNNAC	2 cut(s)	82, 367
Hpy188I	TCNGA	2 cut(s)	16, 160
Hpy188III	TCNNGA	2 cut(s)	251, 583
Hpy8I	GTNNAC	2 cut(s)	82, 367
Hpy99I	CGWCG	1 cut(s)	273
HpyAV	CCTTC	3 cut(s)	165, 212, 433
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	4 cut(s)	170, 317, 487, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 262, 468
HpyF3I	CTNAG	5 cut(s)	9, 252, 321, 361, 370
Hsp92II	CATG	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	118, 304, 560
LguI	GCTCTTC	2 cut(s)	90, 182
LmnI	GCTCC	1 cut(s)	504
Lsp1109I	GCAGC	2 cut(s)	252, 269
LweI	GCATC	2 cut(s)	269, 471
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	3 cut(s)	120, 306, 562
MboI	GATC	3 cut(s)	118, 304, 560
MboII	GAAGA	6 cut(s)	107, 188, 199, 418, 421, 607
MflI	RGATCY	2 cut(s)	304, 560
MhlI	GDGCHC	2 cut(s)	194, 277
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	3 cut(s)	140, 162, 180
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	8 cut(s)	10, 34, 60, 109, 116, 204, 216, 344
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	2 cut(s)	183, 309
Msp20I	TGGCCA	1 cut(s)	494
MspI	CCGG	3 cut(s)	132, 151, 502
MspR9I	CCNGG	3 cut(s)	496, 503, 566
MvaI	CCWGG	2 cut(s)	496, 566
MvnI	CGCG	2 cut(s)	59, 213
MwoI	GCNNNNNNNGC	3 cut(s)	53, 262, 468
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	3 cut(s)	118, 304, 560
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	3 cut(s)	130, 500, 562
PciSI	GCTCTTC	2 cut(s)	90, 182
PcsI	WCGNNNNNNNCGW	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	623
PkrI	GCNGC	4 cut(s)	55, 58, 267, 284
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	494, 564
PspGI	CCWGG	2 cut(s)	494, 564
PspN4I	GGNNCC	3 cut(s)	130, 500, 562
PspPI	GGNCC	1 cut(s)	19
PsuI	RGATCY	2 cut(s)	304, 560
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SacI	GAGCTC	1 cut(s)	277
SapI	GCTCTTC	2 cut(s)	90, 182
SaqAI	TTAA	2 cut(s)	183, 309
SatI	GCNGC	4 cut(s)	54, 57, 266, 283
Sau3AI	GATC	3 cut(s)	118, 304, 560
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	3 cut(s)	496, 503, 566
SduI	GDGCHC	2 cut(s)	194, 277
SetI	ASST	6 cut(s)	45, 127, 148, 277, 355, 454
SfaNI	GCATC	2 cut(s)	269, 471
Sse9I	AATT	3 cut(s)	140, 162, 180
SsiI	CCGC	5 cut(s)	54, 57, 90, 211, 291
SspI	AATATT	1 cut(s)	424
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	3 cut(s)	494, 501, 564
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	5 cut(s)	65, 121, 277, 394, 529
TasI	AATT	3 cut(s)	140, 162, 180
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	2 cut(s)	56, 59
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	2 cut(s)	183, 309
Tru9I	TTAA	2 cut(s)	183, 309
TscAI	CASTG	2 cut(s)	118, 472
TseI	GCWGC	2 cut(s)	265, 282
TspDTI	ATGAA	1 cut(s)	608
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	2 cut(s)	118, 472
XapI	RAATTY	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.