Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004886

Physical Location & Seq

Genomic Coordinates Forward (+)

299773 .. 300170

Gene Structure 398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG004700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTTTCTGTGAACCAAGACAACGTCCCAGGGGCCACATGCACTGCTCCGTTGAAGAAATCTCAGGCGCCGGCGAAAACCGCTGATTCACAGTCGGTTTCTGATCTTGATTTATATGTTGCCATCGCCGCCGCGAGTTTGAGGGTCTCGTCAGTTCACGGTGGTGAGGAAGAGCAGAAGCAAAGCAGTGAGGATCGAGGCGGTTCCGGTGTGAAATTAGCTTACCGGCCTTCAGAAATTCTAACTCACCGAATAATTAAGGAGCTCGGGTCCTCTTCTCCTACCTCTGTGTTGATTGCTTGCTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

103

Amino Acids

10.73

Weight (kDa)

5.61

Isoelectric Point (pI)

72.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004886)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0282711
rosa_laevigata	RLG00000002958 RLG00000012874 RLG00000013624
rosa_multiflora	Rmu_sc0001091.1_g000013 Rmu_sc0004787.1_g000006 Rmu_sc0008470.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017920 Rroxscaffold_1G00028920 Rroxscaffold_4G00324080 Rroxscaffold_5G00350040 Rroxscaffold_5G00350720 Rroxscaffold_5G00360350 Rroxscaffold_7G00196920 Rroxscaffold_7G00213950
rosa_samantha	Rh2BG087300 Rh2CG089700 Rh4BG132200 Rh4CG168100 Rh4CG168200 Rh5AG480100 Rh5AG494000 Rh5DG440000 Rh6AG078500 Rh6AG237200 Rh7AG256800 Rh7BG004700 Rh7BG132400 Rh7BG321400 Rh7CG273300 Rh7CG432000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccII	CGCG	1 cut(s)	134
AciI	CCGC	4 cut(s)	81, 129, 132, 201
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	2 cut(s)	221, 265
AluI	AGCT	2 cut(s)	221, 265
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	33, 227
ApoI	RAATTY	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	33, 270
AsuHPI	GGTGA	2 cut(s)	176, 239
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	151
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	2 cut(s)	129, 132
BlsI	GCNGC	2 cut(s)	130, 133
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	33, 270
BmiI	GGNNCC	4 cut(s)	34, 69, 205, 271
BmrFI	CCNGG	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	28, 29
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bse118I	RCCGGY	2 cut(s)	70, 225
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	28, 29
BseMII	CTCAG	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	35, 229
BshNI	GGYRCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	3 cut(s)	71, 207, 226
BslFI	GGGAC	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	35, 229
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	103, 193
BspACI	CCGC	4 cut(s)	81, 129, 132, 201
BspANI	GGCC	2 cut(s)	35, 229
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	4 cut(s)	34, 69, 205, 271
BspPI	GGATC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	151
BsrFI	RCCGGY	2 cut(s)	70, 225
BssAI	RCCGGY	2 cut(s)	70, 225
BssECI	CCNNGG	2 cut(s)	28, 29
BssMI	GATC	2 cut(s)	103, 193
BssNI	GRCGYC	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	93, 161
Bst6I	CTCTTC	2 cut(s)	165, 280
BstACI	GRCGYC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	72, 301
BstDEI	CTNAG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	106, 196
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	2 cut(s)	103, 193
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 128
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	35, 229
BtgZI	GCGATG	1 cut(s)	109
BtsI	GCAGTG	2 cut(s)	42, 193
BtsIMutI	CAGTG	2 cut(s)	42, 193
Cac8I	GCNNGC	2 cut(s)	72, 301
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	2 cut(s)	70, 225
Cfr13I	GGNCC	2 cut(s)	33, 270
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	4 cut(s)	35, 221, 229, 265
CviKI_1	RGCY	4 cut(s)	35, 221, 229, 265
DdeI	CTNAG	1 cut(s)	63
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	2 cut(s)	105, 195
DpnII	GATC	2 cut(s)	103, 193
Eam1104I	CTCTTC	2 cut(s)	165, 280
EarI	CTCTTC	2 cut(s)	165, 280
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
FaeI	CATG	1 cut(s)	42
FaiI	YATR	3 cut(s)	40, 115, 117
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	1 cut(s)	38
Fnu4HI	GCNGC	2 cut(s)	129, 132
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	129, 132
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	129, 132
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	35, 229
HapII	CCGG	3 cut(s)	71, 207, 226
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	3 cut(s)	71, 207, 226
HphI	GGTGA	2 cut(s)	176, 239
Hpy166II	GTNNAC	2 cut(s)	13, 157
Hpy188I	TCNGA	2 cut(s)	103, 235
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	2 cut(s)	13, 157
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	93, 161
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 128
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	1 cut(s)	68
KasI	GGCGCC	1 cut(s)	67
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	103, 193
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	52, 262
LpnPI	CCDG	6 cut(s)	15, 42, 50, 84, 220, 239
MaeII	ACGT	1 cut(s)	24
MalI	GATC	2 cut(s)	105, 195
MboI	GATC	2 cut(s)	103, 193
MboII	GAAGA	3 cut(s)	67, 182, 267
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	3 cut(s)	215, 237, 255
Mly113I	GGCGCC	1 cut(s)	68
MnlI	CCTC	6 cut(s)	135, 160, 184, 191, 283, 295
MreI	CGCCGGCG	1 cut(s)	70
MroNI	GCCGGC	1 cut(s)	70
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	3 cut(s)	71, 207, 226
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	80, 128
NaeI	GCCGGC	1 cut(s)	72
NarI	GGCGCC	1 cut(s)	68
NdeII	GATC	2 cut(s)	103, 193
NgoMIV	GCCGGC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	4 cut(s)	34, 69, 205, 271
NspI	RCATGY	1 cut(s)	42
OliI	CACNNNNGTG	1 cut(s)	162
PasI	CCCWGGG	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	165
PdiI	GCCGGC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	86
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	130, 133
PluTI	GGCGCC	1 cut(s)	71
PpuMI	RGGWCCY	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	4 cut(s)	34, 69, 205, 271
PspPI	GGNCC	2 cut(s)	33, 270
PspPPI	RGGWCCY	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	162
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	129, 132
Sau3AI	GATC	2 cut(s)	103, 193
Sau96I	GGNCC	2 cut(s)	33, 270
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	4 cut(s)	27, 223, 267, 287
SfoI	GGCGCC	1 cut(s)	69
SgrAI	CRCCGGYG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	3 cut(s)	215, 237, 255
SsiI	CCGC	4 cut(s)	81, 129, 132, 201
SspDI	GGCGCC	1 cut(s)	67
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	93, 161
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	196
TasI	AATT	3 cut(s)	215, 237, 255
TauI	GCSGC	2 cut(s)	131, 134
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	2 cut(s)	49, 193
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	49, 193
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	270
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.