Rroxscaffold_5G00360350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004886
Physical Location & Seq
Reverse (-)
40788768 .. 40795430
6663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360350.1

Sequence Viewer

Length: 351 bp
ATGATGATGGCTGCCATCAACCGTGTGAAGCGAGTGTTTCGCCCGCTGTGTGTAGTGAAGTTGCGACCGCCGTTGAAGGATGAGAGAGATGTCTTTACTGTTGGCATTGTCGGCCACGAAAGGGACTTGTTTTTAAAAAAAAAGGGGAGGAAAGCTTTCATCCATGGCCGAAATGCCGGTGGAGAGATTCTTCAAGGCTTGGGAGGAGTTACGCATCACGGCCAGGTCCTAGCAGATCGTCCGGTGCAAGGTTTCACCGGTCTGATTCAGACCCACCTCTATACGCCGTCGTTTCCATGGCCGAGCTCTCACAATTCGGAACTGTTCGACCTTGAGTTCCCAAGCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.01

Weight (kDa)

10.0

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 68
AcoI YGGCCR 4 cut(s) 112, 166, 220, 299
AfiI CCNNNNNNNGG 2 cut(s) 121, 248
AgeI ACCGGT 1 cut(s) 257
AgsI TTSAA 2 cut(s) 76, 194
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 2 cut(s) 155, 306
AluI AGCT 2 cut(s) 155, 306
Alw21I GWGCWC 1 cut(s) 308
AoxI GGCC 4 cut(s) 112, 166, 220, 299
ApeKI GCWGC 1 cut(s) 11
AsiGI ACCGGT 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 308
BccI CCATC 1 cut(s) 23
BceAI ACGGC 3 cut(s) 55, 235, 271
BciT130I CCWGG 1 cut(s) 224
BfaI CTAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 163, 296
BsaWI WCCGGW 2 cut(s) 241, 257
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 248
Bse118I RCCGGY 2 cut(s) 176, 257
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 2 cut(s) 163, 296
BseGI GGATG 2 cut(s) 85, 159
BseLI CCNNNNNNNGG 2 cut(s) 121, 248
BseRI GAGGAG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 4 cut(s) 114, 168, 222, 301
BshTI ACCGGT 1 cut(s) 257
BsiEI CGRYCG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 308
BsiSI CCGG 3 cut(s) 177, 242, 258
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 121, 248
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 4 cut(s) 114, 168, 222, 301
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 1 cut(s) 235
Bsp19I CCATGG 2 cut(s) 163, 296
BspACI CCGC 2 cut(s) 44, 68
BspANI GGCC 4 cut(s) 114, 168, 222, 301
BsrFI RCCGGY 2 cut(s) 176, 257
BssAI RCCGGY 2 cut(s) 176, 257
BssECI CCNNGG 2 cut(s) 163, 296
BssMI GATC 1 cut(s) 235
BssT1I CCWWGG 2 cut(s) 163, 296
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 3 cut(s) 23, 100, 324
BstC8I GCNNGC 1 cut(s) 44
BstDSI CCRYGG 2 cut(s) 163, 296
BstF5I GGATG 2 cut(s) 85, 159
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BsuRI GGCC 4 cut(s) 114, 168, 222, 301
BtgI CCRYGG 2 cut(s) 163, 296
BtsCI GGATG 2 cut(s) 85, 159
Cac8I GCNNGC 1 cut(s) 44
Cfr10I RCCGGY 2 cut(s) 176, 257
Cfr13I GGNCC 1 cut(s) 226
CspAI ACCGGT 1 cut(s) 257
CviAII CATG 2 cut(s) 164, 297
CviJI RGCY 9 cut(s) 11, 114, 155, 168, 198, 222, 301, 306, 345
CviKI_1 RGCY 9 cut(s) 11, 114, 155, 168, 198, 222, 301, 306, 345
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
DraI TTTAAA 1 cut(s) 135
EaeI YGGCCR 4 cut(s) 112, 166, 220, 299
Ecl136II GAGCTC 1 cut(s) 306
Eco130I CCWWGG 2 cut(s) 163, 296
Eco24I GRGCYC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 2 cut(s) 163, 296
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 2 cut(s) 163, 296
FaeI CATG 2 cut(s) 167, 300
FaiI YATR 3 cut(s) 165, 282, 298
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 163, 296
FauI CCCGC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 2 cut(s) 92, 146
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 4 cut(s) 114, 168, 222, 301
HapII CCGG 3 cut(s) 177, 242, 258
Hin1II CATG 2 cut(s) 167, 300
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 2 cut(s) 187, 265
HpaII CCGG 3 cut(s) 177, 242, 258
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 264, 270, 319
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 3 cut(s) 23, 100, 324
HpyCH4V TGCA 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
Hsp92II CATG 2 cut(s) 167, 300
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 5 cut(s) 190, 209, 236, 255, 271
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 1 cut(s) 313
MnlI CCTC 3 cut(s) 141, 197, 287
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 3 cut(s) 177, 242, 258
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 111
NcoI CCATGG 2 cut(s) 163, 296
NdeII GATC 1 cut(s) 235
NlaIII CATG 2 cut(s) 167, 300
NmeAIII GCCGAG 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 2 cut(s) 187, 265
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
SacI GAGCTC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 308
SetI ASST 6 cut(s) 157, 228, 253, 279, 308, 333
SfaNI GCATC 1 cut(s) 223
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 1 cut(s) 313
SsiI CCGC 2 cut(s) 44, 68
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 2 cut(s) 163, 296
TaaI ACNGT 3 cut(s) 23, 100, 324
TaqI TCGA 1 cut(s) 327
TasI AATT 1 cut(s) 313
TfiI GAWTC 2 cut(s) 187, 265
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.