Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004886

Physical Location & Seq

Genomic Coordinates Reverse (-)

6784039 .. 6784436

Gene Structure 398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG087300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTTTCTGTGAACCAAGACAACGTCCCAGGGGCCACATGCACTGCTTCGTTTAAGAAATCTCAAGCGCCGGCGAAAGCCGCTGATTCACAGTCGGTTTCTGATCTTGATTTATATGTTGCCATCGCCGCCGTGAGTTCGAGGGTCCCATCAGTTCATGGTGGTGAGGAAGAACAGAAGCAAAGCGGTGAGGATCGAGGCGGTTCCGGTGTGAAATTAGCTTACCGGCCTTTTGAAATTCTAGCTCACCGAATAATTAAGGAGCTCGAGTCCTCTTCTCCTACCTCTGTGTTGATTGCTTGCTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

103

Amino Acids

10.8

Weight (kDa)

5.29

Isoelectric Point (pI)

68.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004886)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0282711
rosa_laevigata	RLG00000002958 RLG00000012874 RLG00000013624
rosa_multiflora	Rmu_sc0001091.1_g000013 Rmu_sc0004787.1_g000006 Rmu_sc0008470.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017920 Rroxscaffold_1G00028920 Rroxscaffold_4G00324080 Rroxscaffold_5G00350040 Rroxscaffold_5G00350720 Rroxscaffold_5G00360350 Rroxscaffold_7G00196920 Rroxscaffold_7G00213950
rosa_samantha	Rh2BG087300 Rh2CG089700 Rh4BG132200 Rh4CG168100 Rh4CG168200 Rh5AG480100 Rh5AG494000 Rh5DG440000 Rh6AG078500 Rh6AG237200 Rh7AG256800 Rh7BG004700 Rh7BG132400 Rh7BG321400 Rh7CG273300 Rh7CG432000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	81, 129, 186, 201
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	3 cut(s)	221, 245, 265
AluI	AGCT	3 cut(s)	221, 245, 265
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	33, 227
ApoI	RAATTY	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	33, 145
AsuHPI	GGTGA	3 cut(s)	176, 200, 239
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BccI	CCATC	2 cut(s)	131, 157
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	30
BfaI	CTAG	1 cut(s)	242
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	2 cut(s)	81, 129
BlsI	GCNGC	2 cut(s)	82, 130
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	33, 145
BmiI	GGNNCC	4 cut(s)	34, 146, 147, 205
BmrFI	CCNGG	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	28, 29
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bse118I	RCCGGY	2 cut(s)	70, 225
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	28, 29
BshFI	GGCC	2 cut(s)	35, 229
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	3 cut(s)	71, 207, 226
BslFI	GGGAC	2 cut(s)	11, 131
BsmFI	GGGAC	2 cut(s)	11, 131
BsnI	GGCC	2 cut(s)	35, 229
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	103, 193
BspACI	CCGC	4 cut(s)	81, 129, 186, 201
BspANI	GGCC	2 cut(s)	35, 229
BspLI	GGNNCC	4 cut(s)	34, 146, 147, 205
BspPI	GGATC	1 cut(s)	201
BsrFI	RCCGGY	2 cut(s)	70, 225
BssAI	RCCGGY	2 cut(s)	70, 225
BssECI	CCNNGG	2 cut(s)	28, 29
BssMI	GATC	2 cut(s)	103, 193
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	72, 301
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	106, 196
BstMBI	GATC	2 cut(s)	103, 193
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 128
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	35, 229
BtgZI	GCGATG	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	72, 301
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	2 cut(s)	70, 225
Cfr13I	GGNCC	2 cut(s)	33, 145
CviAII	CATG	2 cut(s)	39, 158
CviJI	RGCY	6 cut(s)	35, 80, 221, 229, 245, 265
CviKI_1	RGCY	6 cut(s)	35, 80, 221, 229, 245, 265
DpnI	GATC	2 cut(s)	105, 195
DpnII	GATC	2 cut(s)	103, 193
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	2 cut(s)	42, 161
FaiI	YATR	4 cut(s)	40, 115, 117, 159
FaqI	GGGAC	2 cut(s)	11, 131
FatI	CATG	2 cut(s)	38, 157
Fnu4HI	GCNGC	2 cut(s)	81, 129
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	81, 129
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	81, 129
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	35, 229
HapII	CCGG	3 cut(s)	71, 207, 226
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	42, 161
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	2 cut(s)	86, 269
HpaII	CCGG	3 cut(s)	71, 207, 226
HphI	GGTGA	3 cut(s)	176, 200, 239
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 128
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	42, 161
HspAI	GCGC	1 cut(s)	68
KflI	GGGWCCC	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	103, 193
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	5 cut(s)	15, 42, 84, 220, 239
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	24
MalI	GATC	2 cut(s)	105, 195
MboI	GATC	2 cut(s)	103, 193
MboII	GAAGA	2 cut(s)	182, 267
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	3 cut(s)	215, 237, 255
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	6 cut(s)	135, 160, 184, 191, 283, 295
MreI	CGCCGGCG	1 cut(s)	70
MroNI	GCCGGC	1 cut(s)	70
MseI	TTAA	2 cut(s)	54, 258
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	3 cut(s)	71, 207, 226
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	80, 128
NaeI	GCCGGC	1 cut(s)	72
NdeII	GATC	2 cut(s)	103, 193
NgoMIV	GCCGGC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	42, 161
NlaIV	GGNNCC	4 cut(s)	34, 146, 147, 205
NspI	RCATGY	1 cut(s)	42
PaeR7I	CTCGAG	1 cut(s)	266
PasI	CCCWGGG	1 cut(s)	29
PdiI	GCCGGC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	86
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	82, 130
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	4 cut(s)	34, 146, 147, 205
PspPI	GGNCC	2 cut(s)	33, 145
PspPPI	RGGWCCY	1 cut(s)	145
PspXI	VCTCGAGB	1 cut(s)	266
PsyI	GACNNNGTC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	162
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	54, 258
SatI	GCNGC	2 cut(s)	81, 129
Sau3AI	GATC	2 cut(s)	103, 193
Sau96I	GGNCC	2 cut(s)	33, 145
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	5 cut(s)	27, 223, 247, 267, 287
Sfr274I	CTCGAG	1 cut(s)	266
SgrAI	CRCCGGYG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	63, 266
SmoI	CTYRAG	2 cut(s)	63, 266
Sse9I	AATT	3 cut(s)	215, 237, 255
SsiI	CCGC	4 cut(s)	81, 129, 186, 201
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	3 cut(s)	140, 196, 267
TasI	AATT	3 cut(s)	215, 237, 255
TauI	GCSGC	2 cut(s)	83, 131
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	54, 258
Tru9I	TTAA	2 cut(s)	54, 258
TscAI	CASTG	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	49
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	42
XhoI	CTCGAG	1 cut(s)	266
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.