Rroxscaffold_7G00196920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004886
Physical Location & Seq
Reverse (-)
40460501 .. 40460814
314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196920.1

Sequence Viewer

Length: 258 bp
ATGGTGAAGAAATCAAAATTGGAATTGGAATCGGAATCGGAAGAAAGCAGAGACGGAGTAGATGATGGCGTGGTGGACGGAGGAAAGATTGTGGGAGGAGCGCTTCATGAGGACGATGGAGTTGGCGGAGTCAATGAGGTCCCTTACCAACCCATACCCATCTCAGATGGCAATGGTTTTTGTGAACCAAGACAACTTCCCAGGGGCCACATGTACTGCTCTGTTCAAGAAATCTCGGGCGTCGGCAAAAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.06

Weight (kDa)

4.63

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 1 cut(s) 215
AfeI AGCGCT 1 cut(s) 102
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 200
AjuI GAANNNNNNNTTGG 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 45
Ama87I CYCGRG 1 cut(s) 235
Aor51HI AGCGCT 1 cut(s) 102
AoxI GGCC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 2 cut(s) 139, 205
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 139
BccI CCATC 4 cut(s) 59, 110, 161, 167
BciT130I CCWGG 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 45
BfoI RGCGCY 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 139, 205
BmiI GGNNCC 2 cut(s) 141, 206
BmrFI CCNGG 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 200, 201
Bse3DI GCAATG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 2 cut(s) 200, 201
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 235
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 176
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 141, 206
BsrDI GCAATG 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 200, 201
BssNI GRCGYC 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 45
BstNI CCWGG 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 207
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 139, 205
CseI GACGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 214
CviAII CATG 2 cut(s) 107, 211
CviJI RGCY 1 cut(s) 207
CviKI_1 RGCY 1 cut(s) 207
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 163
EciI GGCGGA 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 139
Eco47III AGCGCT 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 200
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 2 cut(s) 110, 214
FaiI YATR 3 cut(s) 108, 155, 212
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 106, 210
GlaI GCGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 1 cut(s) 207
HgaI GACGC 1 cut(s) 229
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 2 cut(s) 110, 214
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 3 cut(s) 29, 35, 129
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 76, 185
Hpy188I TCNGA 3 cut(s) 34, 40, 166
Hpy188III TCNNGA 2 cut(s) 107, 227
Hpy8I GTNNAC 2 cut(s) 76, 185
Hpy99I CGWCG 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 163
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 110, 214
HspAI GCGC 1 cut(s) 101
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 2 cut(s) 187, 214
MboII GAAGA 2 cut(s) 19, 53
MluCI AATT 2 cut(s) 17, 23
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 4 cut(s) 74, 89, 103, 130
MspR9I CCNGG 1 cut(s) 202
MvaI CCWGG 1 cut(s) 202
NlaIII CATG 2 cut(s) 110, 214
NlaIV GGNNCC 2 cut(s) 141, 206
NspI RCATGY 1 cut(s) 214
PagI TCATGA 1 cut(s) 106
PasI CCCWGGG 1 cut(s) 201
PciI ACATGT 1 cut(s) 210
PfeI GAWTC 2 cut(s) 29, 35
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 139
PscI ACATGT 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 141, 206
PspPI GGNCC 2 cut(s) 139, 205
PspPPI RGGWCCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
Sau96I GGNCC 2 cut(s) 139, 205
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 202
SetI ASST 1 cut(s) 141
SgeI CNNG 9 cut(s) 82, 119, 201, 213, 214, 223, 239, 247, 249
SinI GGWCC 1 cut(s) 139
Sse9I AATT 2 cut(s) 17, 23
SsiI CCGC 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 254
TasI AATT 2 cut(s) 17, 23
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 2 cut(s) 29, 35
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 2 cut(s) 69, 93
VpaK11BI GGWCC 1 cut(s) 139
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.