Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008470.1

Orthogroup ID

OG0004886

Physical Location & Seq

Genomic Coordinates Reverse (-)

47702 .. 50460

Gene Structure 2759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008470.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgccaacaacagagacgaagagctggctctgtttcacgagatgcagccgcgtggcaaagacaaggagaaaagtgaaactttctactcctgagcaagaacggctgcgacgagctcgatgctgcttctccgcttgttacaaggatcttaaaactgcaactaagaacttctcaaataagattgggcaaggaggttttggctcagtttacttaggggttctaccagatggaactcgacttgctttgaagaagacagaagccaatattgattggaaaaagaaggagtttcaagctgaagttagcatcagtggcagtatccatcatctgcacttggccaggctccggggcttccgtgcaaagggtagcaatcgacttcttgcctatgagtacatggcaaatggatccctggacaaatggattttcaggaaaaaaatgaagagttcgtattggattaggagacaagattcaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr

Protein Analysis

156

Amino Acids

18.03

Weight (kDa)

10.35

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004886)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0282711
rosa_laevigata	RLG00000002958 RLG00000012874 RLG00000013624
rosa_multiflora	Rmu_sc0001091.1_g000013 Rmu_sc0004787.1_g000006 Rmu_sc0008470.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017920 Rroxscaffold_1G00028920 Rroxscaffold_4G00324080 Rroxscaffold_5G00350040 Rroxscaffold_5G00350720 Rroxscaffold_5G00360350 Rroxscaffold_7G00196920 Rroxscaffold_7G00213950
rosa_samantha	Rh2BG087300 Rh2CG089700 Rh4BG132200 Rh4CG168100 Rh4CG168200 Rh5AG480100 Rh5AG494000 Rh5DG440000 Rh6AG078500 Rh6AG237200 Rh7AG256800 Rh7BG004700 Rh7BG132400 Rh7BG321400 Rh7CG273300 Rh7CG432000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	51
AciI	CCGC	2 cut(s)	49, 129
AclWI	GGATC	3 cut(s)	150, 393, 406
AcoI	YGGCCR	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	339, 355
AgsI	TTSAA	2 cut(s)	244, 287
AjnI	CCWGG	2 cut(s)	332, 402
AluBI	AGCT	3 cut(s)	24, 113, 290
AluI	AGCT	3 cut(s)	24, 113, 290
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	8, 448
AlwI	GGATC	3 cut(s)	150, 393, 406
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	45, 103, 120
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	456
BalI	TGGCCA	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	3 cut(s)	57, 90, 107
BccI	CCATC	2 cut(s)	218, 324
BceAI	ACGGC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciT130I	CCWGG	2 cut(s)	334, 404
BciVI	GTATCC	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	8, 448
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	4 cut(s)	46, 49, 104, 121
BlsI	GCNGC	4 cut(s)	47, 50, 105, 122
Bme1390I	CCNGG	3 cut(s)	334, 341, 404
BmiI	GGNNCC	2 cut(s)	338, 400
BmrFI	CCNGG	3 cut(s)	334, 341, 404
BmsI	GCATC	3 cut(s)	32, 107, 309
BpiI	GAAGAC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	340, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 355
BseBI	CCWGG	2 cut(s)	334, 404
BseDI	CCNNGG	2 cut(s)	340, 402
BseLI	CCNNNNNNNGG	2 cut(s)	339, 355
BseMII	CTCAG	2 cut(s)	81, 213
BseXI	GCAGC	3 cut(s)	57, 90, 107
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	339, 355
BsmAI	GTCTC	2 cut(s)	8, 448
BsmBI	CGTCTC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	142, 398
BspACI	CCGC	2 cut(s)	49, 129
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	2 cut(s)	82, 212
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	338, 400
BspPI	GGATC	3 cut(s)	150, 393, 406
BspQI	GCTCTTC	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	340, 402
BssMI	GATC	2 cut(s)	142, 398
BssSI	CACGAG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	2 cut(s)	334, 404
Bst6I	CTCTTC	2 cut(s)	14, 428
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	4 cut(s)	90, 159, 199, 208
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	2 cut(s)	145, 401
BstMAI	GTCTC	2 cut(s)	8, 448
BstMBI	GATC	2 cut(s)	142, 398
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 306
BstNI	CCWGG	2 cut(s)	334, 404
BstSCI	CCNGG	3 cut(s)	332, 339, 402
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	57, 90, 107
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	142, 398
BstYI	RGATCY	2 cut(s)	142, 398
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	1 cut(s)	388
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	4 cut(s)	90, 159, 199, 208
DpnI	GATC	2 cut(s)	144, 400
DpnII	GATC	2 cut(s)	142, 398
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	14, 428
EarI	CTCTTC	2 cut(s)	14, 428
Ecl136II	GAGCTC	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	332, 402
EcoT38I	GRGCYC	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	8
FaeI	CATG	1 cut(s)	391
FaiI	YATR	3 cut(s)	381, 389, 469
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	46, 49, 104, 121
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	4 cut(s)	46, 49, 104, 121
GluI	GCNGC	4 cut(s)	46, 49, 104, 121
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	1 cut(s)	340
Hin1II	CATG	1 cut(s)	391
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	1 cut(s)	456
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188III	TCNNGA	3 cut(s)	37, 89, 421
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	4 cut(s)	45, 155, 325, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 306
HpyF3I	CTNAG	4 cut(s)	90, 159, 199, 208
Hsp92II	CATG	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	142, 398
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	342
LpnPI	CCDG	9 cut(s)	10, 102, 234, 319, 346, 353, 389, 406, 416
Lsp1109I	GCAGC	3 cut(s)	57, 90, 107
LweI	GCATC	3 cut(s)	32, 107, 309
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	2 cut(s)	144, 400
MboI	GATC	2 cut(s)	142, 398
MboII	GAAGA	4 cut(s)	31, 256, 259, 445
MflI	RGATCY	2 cut(s)	142, 398
MhlI	GDGCHC	1 cut(s)	115
MlsI	TGGCCA	1 cut(s)	332
MluNI	TGGCCA	1 cut(s)	332
MnlI	CCTC	1 cut(s)	182
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	332
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	3 cut(s)	334, 341, 404
MvaI	CCWGG	2 cut(s)	334, 404
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	100, 306
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	2 cut(s)	142, 398
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	2 cut(s)	338, 400
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	4 cut(s)	47, 50, 105, 122
Psp124BI	GAGCTC	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	332, 402
PspGI	CCWGG	2 cut(s)	332, 402
PspN4I	GGNNCC	2 cut(s)	338, 400
PsuI	RGATCY	2 cut(s)	142, 398
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	4 cut(s)	46, 49, 104, 121
Sau3AI	GATC	2 cut(s)	142, 398
ScrFI	CCNGG	3 cut(s)	334, 341, 404
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	4 cut(s)	26, 115, 193, 292
SfaNI	GCATC	3 cut(s)	32, 107, 309
SsiI	CCGC	2 cut(s)	49, 129
SspI	AATATT	1 cut(s)	262
SstI	GAGCTC	1 cut(s)	115
StyD4I	CCNGG	3 cut(s)	332, 339, 402
TaqI	TCGA	3 cut(s)	115, 232, 367
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	3 cut(s)	45, 103, 120
TspDTI	ATGAA	1 cut(s)	446
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.